Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G48760.1 | Thale cress | cytosol | 91.3 | 91.75 |
| AT3G24830.1 | Thale cress | cytosol | 91.3 | 91.75 |
| AT4G13170.1 | Thale cress | cytosol | 90.82 | 91.26 |
| KRH36792 | Soybean | nucleus | 88.41 | 88.83 |
| KRH07489 | Soybean | nucleus | 88.41 | 88.83 |
| VIT_07s0005g06490.t01 | Wine grape | cytosol | 86.96 | 87.38 |
| KRH46742 | Soybean | nucleus | 86.96 | 87.38 |
| PGSC0003DMT400019917 | Potato | mitochondrion | 86.47 | 86.89 |
| VIT_05s0029g00020.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 85.99 | 86.41 |
| Solyc12g098330.1.1 | Tomato | nucleus, unclear | 85.99 | 86.41 |
| PGSC0003DMT400040760 | Potato | mitochondrion, plastid | 85.99 | 86.41 |
| KRH11781 | Soybean | nucleus | 85.99 | 86.41 |
| Solyc05g053670.2.1 | Tomato | nucleus | 85.51 | 85.92 |
| PGSC0003DMT400076290 | Potato | cytosol, plastid | 85.51 | 85.92 |
| KRH46743 | Soybean | cytosol | 85.51 | 85.92 |
| VIT_15s0021g00760.t01 | Wine grape | mitochondrion | 47.34 | 85.22 |
| GSMUA_Achr10P... | Banana | mitochondrion | 72.95 | 83.89 |
| PGSC0003DMT400096774 | Potato | mitochondrion, plastid | 81.16 | 83.58 |
| GSMUA_Achr6P23390_001 | Banana | cytosol | 56.04 | 82.86 |
| GSMUA_Achr6P15590_001 | Banana | mitochondrion | 71.98 | 82.78 |
| HORVU2Hr1G063880.5 | Barley | mitochondrion | 82.13 | 82.52 |
| GSMUA_Achr3P17910_001 | Banana | mitochondrion | 71.5 | 82.22 |
| GSMUA_Achr6P08790_001 | Banana | cytosol | 55.56 | 82.14 |
| TraesCS2B01G281300.1 | Wheat | mitochondrion | 81.16 | 81.55 |
| EER93429 | Sorghum | cytosol | 81.16 | 81.55 |
| Zm00001d013252_P001 | Maize | plasma membrane | 80.68 | 81.07 |
| EES17613 | Sorghum | mitochondrion | 80.68 | 81.07 |
| TraesCS2A01G260700.1 | Wheat | golgi, unclear | 80.68 | 81.07 |
| TraesCS2D01G263000.1 | Wheat | mitochondrion | 80.68 | 81.07 |
| Solyc09g091740.2.1 | Tomato | nucleus | 84.54 | 81.02 |
| TraesCS5A01G392900.1 | Wheat | cytosol, golgi, nucleus, unclear | 80.19 | 80.58 |
| TraesCS5B01G397800.1 | Wheat | cytosol | 80.19 | 80.58 |
| TraesCS5D01G402800.1 | Wheat | cytosol | 80.19 | 80.58 |
| GSMUA_Achr3P13700_001 | Banana | mitochondrion | 39.61 | 75.93 |
| HORVU2Hr1G063900.1 | Barley | cytosol, nucleus | 16.91 | 72.92 |
| Os11t0425800-01 | Rice | mitochondrion | 24.64 | 72.86 |
| Zm00001d034059_P006 | Maize | cytosol | 81.64 | 71.01 |
| GSMUA_Achr6P08770_001 | Banana | cytosol, golgi, plastid | 11.11 | 69.7 |
| TraesCS5A01G541100.1 | Wheat | cytosol, mitochondrion | 32.37 | 61.47 |
| Os03t0755700-00 | Rice | nucleus | 37.2 | 58.33 |
Protein Annotations
| MapMan:17.1.2.1.14 | Gene3D:3.90.1180.10 | EntrezGene:819897 | ProteinID:AEE74500.1 | ArrayExpress:AT3G07110 | EnsemblPlantsGene:AT3G07110 |
| RefSeq:AT3G07110 | TAIR:AT3G07110 | RefSeq:AT3G07110-TAIR-G | EnsemblPlants:AT3G07110.2 | TAIR:AT3G07110.2 | Unigene:At.20766 |
| ncoils:Coil | UniProt:F4JD96 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009506 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009719 | GO:GO:0009735 | GO:GO:0009987 | GO:GO:0015934 | GO:GO:0016020 | GO:GO:0019538 |
| GO:GO:0022625 | GO:GO:0022626 | GO:GO:0030529 | InterPro:IPR036899 | HAMAP:MF_01366 | RefSeq:NP_001030654.1 |
| PFAM:PF00572 | PIRSF:PIRSF002181 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00783 | PANTHER:PTHR11545 | PANTHER:PTHR11545:SF3 |
| InterPro:Ribosomal_L13 | InterPro:Ribosomal_L13_CS | InterPro:Ribosomal_L13_euk/arc | InterPro:Ribosomal_L13_sf | SUPFAM:SSF52161 | TIGRFAMs:TIGR01077 |
| UniParc:UPI00005DBE8E | : | : | : | : | : |
Description
Ribosomal protein L13 family protein [Source:UniProtKB/TrEMBL;Acc:F4JD96]
Coordinates
chr3:+:2252019..2253528
Molecular Weight (calculated)
23595.4 Da
IEP (calculated)
11.087
GRAVY (calculated)
-0.402
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSGSGICAK RVVVDARHHM LGRLASVVAK DLLNGQNIVV VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: ANALARLKVF EGVPTPYDKI KRMVVPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKQ ELENKRKERA QAVYERKKQL SKLRAKAEKV AEEKLGSQLD
201: VLAPVKY
101: ANALARLKVF EGVPTPYDKI KRMVVPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKQ ELENKRKERA QAVYERKKQL SKLRAKAEKV AEEKLGSQLD
201: VLAPVKY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.