Factsheet for VIT_07s0005g06490.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0028g02240.t01
VIT_18s0001g09830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24830.1	VIT_12s0028g02240.t01	AT2G42580.1	19000166
AT3G24830.1	VIT_18s0001g09830.t01	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0021g00760.t01	Wine grape	mitochondrion	53.4	95.65
VIT_05s0029g00020.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	93.2	93.2
KRH07489	Soybean	nucleus	90.29	90.29
AT5G48760.1	Thale cress	cytosol	90.29	90.29
KRH46742	Soybean	nucleus	89.81	89.81
KRH36792	Soybean	nucleus	89.32	89.32
PGSC0003DMT400019917	Potato	mitochondrion	89.32	89.32
Bra036669.1-P	Field mustard	cytosol	89.32	89.32
CDY39786	Canola	cytosol	89.32	89.32
CDY03292	Canola	cytosol	89.32	89.32
AT3G24830.1	Thale cress	cytosol	88.83	88.83
PGSC0003DMT400040760	Potato	mitochondrion, plastid	88.83	88.83
Solyc12g098330.1.1	Tomato	nucleus, unclear	88.83	88.83
CDY52083	Canola	cytosol	88.83	88.83
CDY33947	Canola	cytosol	88.83	88.83
CDY05663	Canola	cytosol	88.83	88.83
CDY00046	Canola	cytosol	88.83	88.83
CDX86281	Canola	cytosol	88.83	88.83
CDX85362	Canola	cytosol	88.83	88.83
CDX77383	Canola	cytosol	88.83	88.83
Bra036161.1-P	Field mustard	cytosol	88.83	88.83
KRH11781	Soybean	nucleus	88.35	88.35
Solyc05g053670.2.1	Tomato	nucleus	88.35	88.35
PGSC0003DMT400076290	Potato	cytosol, plastid	88.35	88.35
Bra020681.1-P	Field mustard	cytosol	88.35	88.35
Bra015088.1-P	Field mustard	cytosol	88.35	88.35
AT4G13170.1	Thale cress	cytosol	88.35	88.35
CDY15113	Canola	cytosol	87.86	87.86
Bra013239.1-P	Field mustard	cytosol	87.86	87.86
KRH46743	Soybean	cytosol	87.86	87.86
CDX93039	Canola	cytosol	87.86	87.86
GSMUA_Achr6P15590_001	Banana	mitochondrion	76.21	87.22
GSMUA_Achr3P17910_001	Banana	mitochondrion	76.21	87.22
GSMUA_Achr10P...	Banana	mitochondrion	76.21	87.22
PGSC0003DMT400096774	Potato	mitochondrion, plastid	84.95	87.06
AT3G07110.2	Thale cress	cytosol	87.38	86.96
EER93429	Sorghum	cytosol	86.41	86.41
EES17613	Sorghum	mitochondrion	85.92	85.92
GSMUA_Achr6P23390_001	Banana	cytosol	58.25	85.71
Zm00001d013252_P001	Maize	plasma membrane	85.44	85.44
TraesCS5D01G402800.1	Wheat	cytosol	85.44	85.44
TraesCS5B01G397800.1	Wheat	cytosol	85.44	85.44
TraesCS5A01G392900.1	Wheat	cytosol, golgi, nucleus, unclear	85.44	85.44
GSMUA_Achr6P08790_001	Banana	cytosol	57.77	85.0
Solyc09g091740.2.1	Tomato	nucleus	87.38	83.33
HORVU2Hr1G063880.5	Barley	mitochondrion	83.01	83.01
GSMUA_Achr3P13700_001	Banana	mitochondrion	43.2	82.41
TraesCS2B01G281300.1	Wheat	mitochondrion	82.04	82.04
CDY19938	Canola	mitochondrion	45.15	81.58
TraesCS2D01G263000.1	Wheat	mitochondrion	81.55	81.55
TraesCS2A01G260700.1	Wheat	golgi, unclear	81.07	81.07
Os11t0425800-01	Rice	mitochondrion	26.7	78.57
GSMUA_Achr6P08770_001	Banana	cytosol, golgi, plastid	12.14	75.76
Zm00001d034059_P006	Maize	cytosol	86.89	75.21
HORVU2Hr1G063900.1	Barley	cytosol, nucleus	16.5	70.83
TraesCS5A01G541100.1	Wheat	cytosol, mitochondrion	35.44	66.97
Os03t0755700-00	Rice	nucleus	40.78	63.64

Protein Annotations

EntrezGene:100261957	wikigene:100261957	MapMan:17.1.2.1.14	Gene3D:3.90.1180.10	ProteinID:CCB60285	ProteinID:CCB60285.1
UniProt:F6I019	EMBL:FN596502	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529
InterPro:IPR036899	EntrezGene:LOC100261957	wikigene:LOC100261957	HAMAP:MF_01366	PFAM:PF00572	PIRSF:PIRSF002181
ScanProsite:PS00783	PANTHER:PTHR11545	PANTHER:PTHR11545:SF3	InterPro:Ribosomal_L13	InterPro:Ribosomal_L13_CS	InterPro:Ribosomal_L13_euk/arc
InterPro:Ribosomal_L13_sf	SUPFAM:SSF52161	TIGR:TC67919	TIGRFAMs:TIGR01077	UniParc:UPI00015CBD96	ArrayExpress:VIT_07s0005g06490
EnsemblPlantsGene:VIT_07s0005g06490	EnsemblPlants:VIT_07s0005g06490.t01	unigene:Vvi.1313	RefSeq:XP_002267491	RefSeq:XP_002267491.1	SEG:seg

Description

No Description!

Coordinates

chr7:+:11788477..11791776

Molecular Weight (calculated)

23517.6 Da

IEP (calculated)

11.091

GRAVY (calculated)

-0.356

Length

206 amino acids

Sequence
(BLAST)

001: MVSGSGICAG RVVVDARHHM LGRLASILAK ELLNGQKVVV VRCEEICLSG GLVRQKMKYL RFLRKRMNTK PSHGPIHFRA PSKILWRTIR GMIPHKTKRG
101: AAALARLKAY EGIPPPYDKM KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIRE LEKKRKERAQ LAYERKKQLT KLRVKAEKVA EEKLSTQLDI
201: LAAVKY

Best Arabidopsis Sequence Match ( AT5G48760.2 )
(BLAST)

001: MVSGSGICSK RVVVDARHHM LGRLASITAK ELLNGQKVVI VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY

Arabidopsis Description

RPL13AD60S ribosomal protein L13a-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.