Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G48760.1 | Thale cress | cytosol | 92.23 | 92.23 |
| AT3G24830.1 | Thale cress | cytosol | 91.75 | 91.75 |
| AT3G07110.2 | Thale cress | cytosol | 91.26 | 90.82 |
| KRH36792 | Soybean | nucleus | 89.32 | 89.32 |
| KRH07489 | Soybean | nucleus | 88.83 | 88.83 |
| VIT_07s0005g06490.t01 | Wine grape | cytosol | 88.35 | 88.35 |
| VIT_05s0029g00020.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 87.86 | 87.86 |
| VIT_15s0021g00760.t01 | Wine grape | mitochondrion | 49.03 | 87.83 |
| KRH46742 | Soybean | nucleus | 87.38 | 87.38 |
| Solyc12g098330.1.1 | Tomato | nucleus, unclear | 87.38 | 87.38 |
| Solyc05g053670.2.1 | Tomato | nucleus | 86.89 | 86.89 |
| PGSC0003DMT400019917 | Potato | mitochondrion | 86.89 | 86.89 |
| PGSC0003DMT400040760 | Potato | mitochondrion, plastid | 86.41 | 86.41 |
| KRH11781 | Soybean | nucleus | 86.41 | 86.41 |
| PGSC0003DMT400076290 | Potato | cytosol, plastid | 85.92 | 85.92 |
| KRH46743 | Soybean | cytosol | 85.92 | 85.92 |
| PGSC0003DMT400096774 | Potato | mitochondrion, plastid | 82.52 | 84.58 |
| GSMUA_Achr10P... | Banana | mitochondrion | 73.79 | 84.44 |
| GSMUA_Achr6P23390_001 | Banana | cytosol | 56.8 | 83.57 |
| GSMUA_Achr3P17910_001 | Banana | mitochondrion | 72.82 | 83.33 |
| GSMUA_Achr6P15590_001 | Banana | mitochondrion | 72.82 | 83.33 |
| HORVU2Hr1G063880.5 | Barley | mitochondrion | 83.01 | 83.01 |
| GSMUA_Achr6P08790_001 | Banana | cytosol | 56.31 | 82.86 |
| EER93429 | Sorghum | cytosol | 82.52 | 82.52 |
| Zm00001d013252_P001 | Maize | plasma membrane | 82.04 | 82.04 |
| EES17613 | Sorghum | mitochondrion | 82.04 | 82.04 |
| TraesCS2B01G281300.1 | Wheat | mitochondrion | 82.04 | 82.04 |
| TraesCS2A01G260700.1 | Wheat | golgi, unclear | 81.55 | 81.55 |
| TraesCS2D01G263000.1 | Wheat | mitochondrion | 81.07 | 81.07 |
| TraesCS5A01G392900.1 | Wheat | cytosol, golgi, nucleus, unclear | 81.07 | 81.07 |
| TraesCS5D01G402800.1 | Wheat | cytosol | 81.07 | 81.07 |
| Solyc09g091740.2.1 | Tomato | nucleus | 84.95 | 81.02 |
| TraesCS5B01G397800.1 | Wheat | cytosol | 80.58 | 80.58 |
| GSMUA_Achr3P13700_001 | Banana | mitochondrion | 40.78 | 77.78 |
| Os11t0425800-01 | Rice | mitochondrion | 25.73 | 75.71 |
| GSMUA_Achr6P08770_001 | Banana | cytosol, golgi, plastid | 11.65 | 72.73 |
| Zm00001d034059_P006 | Maize | cytosol | 83.01 | 71.85 |
| HORVU2Hr1G063900.1 | Barley | cytosol, nucleus | 16.5 | 70.83 |
| TraesCS5A01G541100.1 | Wheat | cytosol, mitochondrion | 33.5 | 63.3 |
| Os03t0755700-00 | Rice | nucleus | 38.35 | 59.85 |
Protein Annotations
| MapMan:17.1.2.1.14 | Gene3D:3.90.1180.10 | EntrezGene:826931 | ProteinID:AEE83240.1 | ArrayExpress:AT4G13170 | EnsemblPlantsGene:AT4G13170 |
| RefSeq:AT4G13170 | TAIR:AT4G13170 | RefSeq:AT4G13170-TAIR-G | EnsemblPlants:AT4G13170.1 | TAIR:AT4G13170.1 | EMBL:AY052263 |
| EMBL:AY060518 | ProteinID:CAB41927.1 | ProteinID:CAB78359.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015934 | GO:GO:0016020 | GO:GO:0019538 |
| GO:GO:0022625 | GO:GO:0030529 | InterPro:IPR036899 | HAMAP:MF_01366 | RefSeq:NP_193053.1 | PFAM:PF00572 |
| PIRSF:PIRSF002181 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | ScanProsite:PS00783 | PANTHER:PTHR11545 | PANTHER:PTHR11545:SF3 | UniProt:Q9SVR0 | InterPro:Ribosomal_L13 |
| InterPro:Ribosomal_L13_CS | InterPro:Ribosomal_L13_euk/arc | InterPro:Ribosomal_L13_sf | SUPFAM:SSF52161 | TIGRFAMs:TIGR01077 | UniParc:UPI0000000E56 |
Description
RPL13AC60S ribosomal protein L13a-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVR0]
Coordinates
chr4:-:7653594..7656594
Molecular Weight (calculated)
23630.5 Da
IEP (calculated)
11.062
GRAVY (calculated)
-0.475
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSGSGICAK RVVVDGRHHM LGRLASNTAK ELLNGQEVVV VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVF EGIPPPYDKI KRMVIPDALK VLRLQSGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERSQ VMYERKKQLN KLRTKAEKVA EERLGSQLDV
201: LAPVKY
101: AAALARLKVF EGIPPPYDKI KRMVIPDALK VLRLQSGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERSQ VMYERKKQLN KLRTKAEKVA EERLGSQLDV
201: LAPVKY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.