Factsheet for GSMUA_Achr3P13700_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P25160_001
GSMUA_Achr4P08560_001
GSMUA_Achr7P24480_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G24830.1	GSMUA_Achr10P...	AT2G42580.1	19000166
AT3G24830.1	GSMUA_Achr3P25160_001	AT2G42580.1	19000166
AT3G24830.1	GSMUA_Achr4P08560_001	AT2G42580.1	19000166
AT3G24830.1	GSMUA_Achr7P24480_001	AT2G42580.1	19000166
AT3G24830.1	GSMUA_AchrUn_...	AT2G42580.1	19000166
AT3G24830.1	GSMUA_AchrUn_...	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G541100.1	Wheat	cytosol, mitochondrion	61.11	60.55
VIT_05s0029g00020.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	83.33	43.69
PGSC0003DMT400096774	Potato	mitochondrion, plastid	80.56	43.28
VIT_07s0005g06490.t01	Wine grape	cytosol	82.41	43.2
TraesCS5A01G392900.1	Wheat	cytosol, golgi, nucleus, unclear	81.48	42.72
TraesCS5D01G402800.1	Wheat	cytosol	81.48	42.72
TraesCS5B01G397800.1	Wheat	cytosol	81.48	42.72
PGSC0003DMT400019917	Potato	mitochondrion	81.48	42.72
PGSC0003DMT400040760	Potato	mitochondrion, plastid	81.48	42.72
Solyc05g053670.2.1	Tomato	nucleus	81.48	42.72
Solyc12g098330.1.1	Tomato	nucleus, unclear	81.48	42.72
PGSC0003DMT400076290	Potato	cytosol, plastid	80.56	42.23
HORVU2Hr1G063880.5	Barley	mitochondrion	79.63	41.75
CDX77383	Canola	cytosol	78.7	41.26
Zm00001d013252_P001	Maize	plasma membrane	78.7	41.26
TraesCS2D01G263000.1	Wheat	mitochondrion	78.7	41.26
Bra015088.1-P	Field mustard	cytosol	78.7	41.26
EER93429	Sorghum	cytosol	78.7	41.26
CDY52083	Canola	cytosol	78.7	41.26
CDY39786	Canola	cytosol	78.7	41.26
TraesCS2B01G281300.1	Wheat	mitochondrion	78.7	41.26
TraesCS2A01G260700.1	Wheat	golgi, unclear	78.7	41.26
CDY03292	Canola	cytosol	78.7	41.26
Bra036669.1-P	Field mustard	cytosol	78.7	41.26
CDY15113	Canola	cytosol	77.78	40.78
Bra013239.1-P	Field mustard	cytosol	77.78	40.78
AT4G13170.1	Thale cress	cytosol	77.78	40.78
CDX93039	Canola	cytosol	77.78	40.78
EES17613	Sorghum	mitochondrion	76.85	40.29
CDY33947	Canola	cytosol	76.85	40.29
CDY05663	Canola	cytosol	76.85	40.29
CDY00046	Canola	cytosol	76.85	40.29
CDX86281	Canola	cytosol	76.85	40.29
CDX85362	Canola	cytosol	76.85	40.29
Bra036161.1-P	Field mustard	cytosol	76.85	40.29
Bra020681.1-P	Field mustard	cytosol	76.85	40.29
AT5G48760.1	Thale cress	cytosol	76.85	40.29
AT3G24830.1	Thale cress	cytosol	76.85	40.29
Solyc09g091740.2.1	Tomato	nucleus	80.56	40.28
AT3G07110.2	Thale cress	cytosol	75.93	39.61
VIT_15s0021g00760.t01	Wine grape	mitochondrion	40.74	38.26
GSMUA_Achr6P15590_001	Banana	mitochondrion	62.96	37.78
GSMUA_Achr3P17910_001	Banana	mitochondrion	62.96	37.78
GSMUA_Achr10P...	Banana	mitochondrion	62.96	37.78
Zm00001d034059_P006	Maize	cytosol	79.63	36.13
GSMUA_Achr6P23390_001	Banana	cytosol	33.33	25.71
GSMUA_Achr6P08790_001	Banana	cytosol	33.33	25.71
Os03t0755700-00	Rice	nucleus	29.63	24.24
CDY19938	Canola	mitochondrion	25.0	23.68
Os11t0425800-01	Rice	mitochondrion	8.33	12.86
KRH25477	Soybean	nucleus	0.0	0.0
HORVU2Hr1G063900.1	Barley	cytosol, nucleus	0.0	0.0
GSMUA_Achr6P08770_001	Banana	cytosol, golgi, plastid	0.0	0.0

Protein Annotations

MapMan:17.1.2.1.14	Gene3D:3.90.1180.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr3G13700_001
EnsemblPlants:GSMUA_Achr3P13700_001	EnsemblPlants:GSMUA_Achr3T13700_001	InterPro:IPR036899	UniProt:M0SED7	PIRSF:PIRSF002181	PANTHER:PTHR11545
PANTHER:PTHR11545:SF3	InterPro:Ribosomal_L13	InterPro:Ribosomal_L13_euk/arc	InterPro:Ribosomal_L13_sf	SUPFAM:SSF52161	TIGRFAMs:TIGR01077
UniParc:UPI000294CDD9	:	:	:	:	:

Description

60S ribosomal protein L13a [Source:GMGC_GENE;Acc:GSMUA_Achr3G13700_001]

Coordinates

chr3:-:12382555..12382975

Molecular Weight (calculated)

12251.6 Da

IEP (calculated)

11.734

GRAVY (calculated)

0.045

Length

108 amino acids

Sequence
(BLAST)

001: MVSRSVVCAR WVVVDPRHHM LGRLASILAK ELLNGQRVAV VRCEDMCLSG GLDRQKMKYL RFLRKLMNTK PSHGPIHFRA PAKILWRTIR GMIPHETKLG
101: AVILAQGL

Best Arabidopsis Sequence Match ( AT3G07110.1 )
(BLAST)

001: MVSGSGICAK RVVVDARHHM LGRLASVVAK DLLNGQNIVV VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: ANALARLKVF EGVPTPYDKI KRMVVPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LENKRKERAQ AVYERKKQLS KLRAKAEKVA EEKLGSQLDV
201: LAPVKY

Arabidopsis Description

Ribosomal protein L13 family protein [Source:UniProtKB/TrEMBL;Acc:F4JD96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.