Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G392900.1 | Wheat | cytosol, golgi, nucleus, unclear | 100.0 | 100.0 |
| TraesCS5B01G397800.1 | Wheat | cytosol | 99.51 | 99.51 |
| EER93429 | Sorghum | cytosol | 92.23 | 92.23 |
| EES17613 | Sorghum | mitochondrion | 91.26 | 91.26 |
| Zm00001d013252_P001 | Maize | plasma membrane | 90.29 | 90.29 |
| TraesCS2D01G263000.1 | Wheat | mitochondrion | 89.81 | 89.81 |
| GSMUA_Achr6P15590_001 | Banana | mitochondrion | 77.18 | 88.33 |
| GSMUA_Achr10P... | Banana | mitochondrion | 76.7 | 87.78 |
| GSMUA_Achr3P17910_001 | Banana | mitochondrion | 76.7 | 87.78 |
| Os11t0425800-01 | Rice | mitochondrion | 29.61 | 87.14 |
| Solyc12g098330.1.1 | Tomato | nucleus, unclear | 85.92 | 85.92 |
| PGSC0003DMT400019917 | Potato | mitochondrion | 85.92 | 85.92 |
| PGSC0003DMT400076290 | Potato | cytosol, plastid | 85.92 | 85.92 |
| GSMUA_Achr6P23390_001 | Banana | cytosol | 58.25 | 85.71 |
| PGSC0003DMT400040760 | Potato | mitochondrion, plastid | 85.44 | 85.44 |
| Solyc05g053670.2.1 | Tomato | nucleus | 85.44 | 85.44 |
| VIT_07s0005g06490.t01 | Wine grape | cytosol | 85.44 | 85.44 |
| VIT_15s0021g00760.t01 | Wine grape | mitochondrion | 47.57 | 85.22 |
| GSMUA_Achr6P08790_001 | Banana | cytosol | 57.28 | 84.29 |
| VIT_05s0029g00020.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 83.98 | 83.98 |
| Bra036669.1-P | Field mustard | cytosol | 83.5 | 83.5 |
| CDY03292 | Canola | cytosol | 83.5 | 83.5 |
| CDY39786 | Canola | cytosol | 83.5 | 83.5 |
| AT5G48760.1 | Thale cress | cytosol | 83.5 | 83.5 |
| CDY52083 | Canola | cytosol | 83.01 | 83.01 |
| CDY33947 | Canola | cytosol | 83.01 | 83.01 |
| CDY05663 | Canola | cytosol | 83.01 | 83.01 |
| CDY00046 | Canola | cytosol | 83.01 | 83.01 |
| CDX86281 | Canola | cytosol | 83.01 | 83.01 |
| CDX85362 | Canola | cytosol | 83.01 | 83.01 |
| CDX77383 | Canola | cytosol | 83.01 | 83.01 |
| Bra036161.1-P | Field mustard | cytosol | 83.01 | 83.01 |
| PGSC0003DMT400096774 | Potato | mitochondrion, plastid | 80.58 | 82.59 |
| CDY15113 | Canola | cytosol | 82.52 | 82.52 |
| CDX93039 | Canola | cytosol | 82.52 | 82.52 |
| Bra020681.1-P | Field mustard | cytosol | 82.52 | 82.52 |
| Bra015088.1-P | Field mustard | cytosol | 82.52 | 82.52 |
| Bra013239.1-P | Field mustard | cytosol | 82.52 | 82.52 |
| AT3G24830.1 | Thale cress | cytosol | 81.55 | 81.55 |
| GSMUA_Achr3P13700_001 | Banana | mitochondrion | 42.72 | 81.48 |
| AT4G13170.1 | Thale cress | cytosol | 81.07 | 81.07 |
| Solyc09g091740.2.1 | Tomato | nucleus | 84.95 | 81.02 |
| Zm00001d034059_P006 | Maize | cytosol | 93.2 | 80.67 |
| AT3G07110.2 | Thale cress | cytosol | 80.58 | 80.19 |
| CDY19938 | Canola | mitochondrion | 40.29 | 72.81 |
| GSMUA_Achr6P08770_001 | Banana | cytosol, golgi, plastid | 11.65 | 72.73 |
| Os03t0755700-00 | Rice | nucleus | 43.69 | 68.18 |
| KRH25477 | Soybean | nucleus | 17.48 | 59.02 |
Protein Annotations
| MapMan:17.1.2.1.14 | Gene3D:3.90.1180.10 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015934 | GO:GO:0019538 | InterPro:IPR036899 |
| HAMAP:MF_01366 | PFAM:PF00572 | PIRSF:PIRSF002181 | ScanProsite:PS00783 | PANTHER:PTHR11545 | PANTHER:PTHR11545:SF3 |
| InterPro:Ribosomal_L13 | InterPro:Ribosomal_L13_CS | InterPro:Ribosomal_L13_euk/arc | InterPro:Ribosomal_L13_sf | SUPFAM:SSF52161 | TIGRFAMs:TIGR01077 |
| EnsemblPlantsGene:TraesCS5D01G402800 | EnsemblPlants:TraesCS5D01G402800.1 | TIGR:cd00392 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5D:+:468651742..468653895
Molecular Weight (calculated)
23531.4 Da
IEP (calculated)
11.040
GRAVY (calculated)
-0.416
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSGSGVCAK RVVVDARHHM LGRLASIVAK ELLNGQRVVV VRCEEICMSG GLVRQKMKYL RFLRKRMNTK PSHGPIHFRA PAKILWRTIR GMIPHKTARG
101: EAALARLKAY EGVPPPYDRT KRMVIPDALK VLRLQPGHRY CLLGQLSKEV GWNYADTIRE LEEKRKEKAK VSYDRRKQLA KLRVKAEKAA EEKLGTQLEI
201: LAPIKY
101: EAALARLKAY EGVPPPYDRT KRMVIPDALK VLRLQPGHRY CLLGQLSKEV GWNYADTIRE LEEKRKEKAK VSYDRRKQLA KLRVKAEKAA EEKLGTQLEI
201: LAPIKY
001: MVSGSGICSK RVVVDARHHM LGRLASITAK ELLNGQKVVI VRCEEICLSG GLVRQKMKYM RFLRKRMNTK PSHGPIHFRA PSKIFWRTVR GMIPHKTKRG
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY
101: AAALARLKVY EGVPTPYDKI KRMVIPDALK VLRLQAGHKY CLLGRLSSEV GWNHYDTIKE LETKRKERAH VVYERKKQLN KLRVKAEKVA EEKLGAQLDI
201: LAPVKY
Arabidopsis Description
RPL13AD60S ribosomal protein L13a-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.