Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G427400.1 | Wheat | cytosol | 98.56 | 98.13 |
| TraesCS1D01G437100.1 | Wheat | nucleus | 98.27 | 97.71 |
| HORVU1Hr1G093390.2 | Barley | cytosol | 93.8 | 96.73 |
| OQU78515 | Sorghum | cytosol | 79.39 | 78.71 |
| Os05t0587300-01 | Rice | cytosol | 61.96 | 77.48 |
| TraesCS3B01G251600.1 | Wheat | cytosol, mitochondrion | 74.64 | 75.29 |
| GSMUA_Achr4P08560_001 | Banana | cytosol | 59.65 | 60.44 |
| GSMUA_Achr7P24480_001 | Banana | cytosol | 56.2 | 60.09 |
| TraesCS3B01G162100.1 | Wheat | cytosol | 55.48 | 57.29 |
| VIT_18s0001g09830.t01 | Wine grape | cytosol | 21.47 | 56.44 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 40.78 | 56.26 |
| VIT_19s0014g01470.t01 | Wine grape | cytosol | 54.76 | 54.83 |
| GSMUA_Achr3P25160_001 | Banana | cytosol | 55.76 | 54.35 |
| KRH55099 | Soybean | nucleus | 51.73 | 52.95 |
| KRH22291 | Soybean | plastid | 44.38 | 52.74 |
| Bra038116.1-P | Field mustard | cytosol | 50.0 | 52.74 |
| CDY25865 | Canola | cytosol | 50.0 | 52.74 |
| KRH26223 | Soybean | nucleus | 51.15 | 52.51 |
| KRH21985 | Soybean | cytosol | 52.16 | 52.31 |
| VIT_12s0028g02240.t01 | Wine grape | cytosol | 53.46 | 52.25 |
| CDY45930 | Canola | cytosol | 49.57 | 52.2 |
| CDY25722 | Canola | cytosol, plastid | 50.14 | 52.17 |
| Bra030946.1-P | Field mustard | cytosol, plastid | 50.0 | 51.79 |
| CDY02514 | Canola | cytosol, plastid | 50.0 | 51.79 |
| KRH27330 | Soybean | cytosol | 52.02 | 51.72 |
| Solyc07g062580.2.1 | Tomato | cytosol | 52.16 | 51.64 |
| PGSC0003DMT400032362 | Potato | cytosol | 52.02 | 51.57 |
| GSMUA_AchrUn_... | Banana | cytosol | 19.74 | 51.12 |
| PGSC0003DMT400054803 | Potato | cytosol | 21.33 | 50.34 |
| AT1G53300.1 | Thale cress | cytosol | 49.86 | 49.5 |
| Zm00001d009724_P009 | Maize | cytosol | 75.07 | 48.74 |
| Bra000267.1-P | Field mustard | cytosol | 46.4 | 47.92 |
| CDY61202 | Canola | cytosol | 46.25 | 47.84 |
| CDY34224 | Canola | cytosol | 4.76 | 47.83 |
| AT3G58620.1 | Thale cress | cytosol | 46.83 | 47.65 |
| CDY42827 | Canola | cytosol | 45.68 | 47.24 |
| AT2G42580.1 | Thale cress | cytosol | 46.69 | 46.89 |
| Bra007405.1-P | Field mustard | cytosol | 45.24 | 46.66 |
| CDY51514 | Canola | cytosol | 44.96 | 46.64 |
| CDY55390 | Canola | cytosol | 44.81 | 46.49 |
| CDX71941 | Canola | cytosol | 44.96 | 46.29 |
| CDY49237 | Canola | cytosol | 44.38 | 46.18 |
| Bra004709.1-P | Field mustard | cytosol | 43.23 | 45.66 |
| KRH27037 | Soybean | nucleus | 43.8 | 45.04 |
| PGSC0003DMT400054902 | Potato | cytosol | 19.16 | 44.48 |
| Bra023795.1-P | Field mustard | cytosol | 5.48 | 43.18 |
| Solyc10g007240.1.1 | Tomato | cytosol | 36.46 | 42.59 |
| PGSC0003DMT400054904 | Potato | cytosol | 37.03 | 42.55 |
| Solyc10g007230.1.1 | Tomato | cytosol | 35.88 | 41.78 |
| PGSC0003DMT400054911 | Potato | cytosol | 31.27 | 41.65 |
| PGSC0003DMT400054796 | Potato | cytosol, plastid | 36.89 | 41.63 |
| AT3G14950.1 | Thale cress | cytosol | 43.23 | 41.1 |
| Solyc10g007220.1.1 | Tomato | cytosol | 29.83 | 40.99 |
| Solyc10g007420.2.1 | Tomato | cytosol | 24.35 | 39.76 |
| PGSC0003DMT400054909 | Potato | cytosol | 23.2 | 39.08 |
| Bra027292.1-P | Field mustard | cytosol | 41.07 | 38.83 |
| CDX98517 | Canola | cytosol | 40.35 | 38.67 |
| CDX97619 | Canola | cytosol | 40.35 | 38.62 |
| Solyc10g007250.1.1 | Tomato | cytosol | 15.42 | 38.35 |
| CDY32327 | Canola | cytosol | 40.2 | 38.27 |
| CDY20095 | Canola | nucleus | 39.91 | 38.05 |
| Bra021583.1-P | Field mustard | nucleus | 40.49 | 37.17 |
| PGSC0003DMT400091014 | Potato | nucleus | 31.84 | 36.41 |
| CDY34222 | Canola | cytosol | 16.14 | 36.36 |
| CDY40820 | Canola | mitochondrion | 14.7 | 36.3 |
| Solyc10g007430.1.1 | Tomato | cytosol, plastid | 19.45 | 35.71 |
| CDY34223 | Canola | cytosol | 15.99 | 34.05 |
| Bra023793.1-P | Field mustard | cytosol | 20.17 | 33.98 |
| Bra023794.1-P | Field mustard | cytosol, nucleus, plastid | 15.56 | 33.13 |
| TraesCS6B01G330500.1 | Wheat | mitochondrion, plastid | 26.95 | 32.64 |
| TraesCS5B01G335700.1 | Wheat | cytosol | 8.36 | 25.33 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:11.3.2.5 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0019725 | GO:GO:0045454 | InterPro:IPR011990 | InterPro:IPR013026 |
| InterPro:IPR013766 | InterPro:IPR019734 | PFAM:PF00085 | PFAM:PF00515 | PFAM:PF13432 | PFscan:PS50005 |
| PFscan:PS50293 | PANTHER:PTHR22904 | PANTHER:PTHR22904:SF395 | SMART:SM00028 | SUPFAM:SSF48452 | SUPFAM:SSF52833 |
| InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_1 | InterPro:TPR_repeat | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_domain |
| EnsemblPlantsGene:TraesCS1B01G462300 | EnsemblPlants:TraesCS1B01G462300.1 | TIGR:cd02947 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1B:-:674668170..674671574
Molecular Weight (calculated)
72989.5 Da
IEP (calculated)
9.235
GRAVY (calculated)
-0.277
Length
694 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSEADRVR RLTLEAGGGV DRDKPDSKRD VFADLGSPVS PLRLRATPSS SSSSAGSAKS PALCNAAAGG GRGGGARSVS GRGSHSGELA AESGSGSASS
101: NPPRPPGHRR SGSGPLIFSG GSGSSGGGGG GSTASSPLTN ALPTGNICSS GRVAPAPAAP RPRARPDVLG SGTGHYGHGS IMRGGMAPAR SGGIDAAPLA
201: GRSSRSPASF PAPPDSLQEV TRAGNELYKQ GRYGDALRHY DRALALCPDS AACRGNRAAA LTGLGRLAEA LRDCEEAVRL DPASGRAHGR LAALCLRFGM
301: VEKARRQLTL AGNANLSDPA EWQKLYEVES HLGKCMDARR IGDWKSALRE ADAAIANGAD SSQLLLAMRS EALLRLNKLE EADSTITGLL KLDSASLSSM
401: STKLSGMVAD SYVHVVQAQV NMAFGRFDAA IGIAEKARAI DPANAEVGLI LNNMRLVARA RAQGNDLFKA GKFAEASIAY GEGLKHESSN PVLYCNRAAC
501: WSKLGRWAKA VEDCNEALRI QPSYTKALLR RAASYAKLER WADCVRDYEV LRKELPGDTE VAESLFHAQV ALKTTRGEEV SNMKFGGEVE IVTSIEQVRA
601: AIHSPGVTVL YFMATMNQQC AQITPSVDAL CSECPSVNFL KVNVDESPMI AKAENVRVVP TFKIYKDGAR VKEMICPSLH VLRYSVRHYA VSNS
101: NPPRPPGHRR SGSGPLIFSG GSGSSGGGGG GSTASSPLTN ALPTGNICSS GRVAPAPAAP RPRARPDVLG SGTGHYGHGS IMRGGMAPAR SGGIDAAPLA
201: GRSSRSPASF PAPPDSLQEV TRAGNELYKQ GRYGDALRHY DRALALCPDS AACRGNRAAA LTGLGRLAEA LRDCEEAVRL DPASGRAHGR LAALCLRFGM
301: VEKARRQLTL AGNANLSDPA EWQKLYEVES HLGKCMDARR IGDWKSALRE ADAAIANGAD SSQLLLAMRS EALLRLNKLE EADSTITGLL KLDSASLSSM
401: STKLSGMVAD SYVHVVQAQV NMAFGRFDAA IGIAEKARAI DPANAEVGLI LNNMRLVARA RAQGNDLFKA GKFAEASIAY GEGLKHESSN PVLYCNRAAC
501: WSKLGRWAKA VEDCNEALRI QPSYTKALLR RAASYAKLER WADCVRDYEV LRKELPGDTE VAESLFHAQV ALKTTRGEEV SNMKFGGEVE IVTSIEQVRA
601: AIHSPGVTVL YFMATMNQQC AQITPSVDAL CSECPSVNFL KVNVDESPMI AKAENVRVVP TFKIYKDGAR VKEMICPSLH VLRYSVRHYA VSNS
001: MPKSVKPISE SDKLSDHLRD SSLTSEINKP DFRELDLGSP VSPLRSQPRG LTTTTTTTTT SSSSSSSSGS VTGRIKHAPV IGRSNSVRSQ SNSSSGNNNL
101: RPRSDSATTS SSSHSQPLLS SSSSSATSPA PTSPANVLPT GNICPSGKIQ ITGMTQSRSR SDVLGSGTGT YGHGSIMRGG GISPAKPTNT GGGSNSPVNV
201: GSSSRSSSTV ATGETPIWKK AILGSDSEEV KRVGNEMYRK GLFNEALKLY DRAIALSPTN AAYRSNRAAA LIGLSRIGEA VKECEDAVRS DPNYGRAHHR
301: LALLLIRLGQ VNSARKHLCF LGRPSDPMEL QKLEAVEKHL IKCVDARRVT DWKTVLIEAD AAIVSGADFS PQLFMCKVEA FLKLHRLDDA QSKLLEVPKV
401: EPFPVSCSQT RFSGMACEAY IYFVKAQIEM ALGRFENAVM AAEKASQIDP RCNEVAMLHN TVTLVARARA RGNDLYKSER YTEASSAYAE GLRLDPCNAI
501: LYCNRAACWF KLGMWERSIE DCNQALRYQP SYTKPLLRRA ASNSKMERWG AAVSDYEALI RELPHDKEVA ESLFHAQVAL KKSRGEEVLN MEFGGEVEEI
601: YSLEQFKSAM NLPGVSVIHF STASDHQCKQ ISPFVDSLCT RYPSIHFLKV DIDKCPSIGN AENVRVVPTV KIYKNGSRVK EIVCPSKEVL EYSVRHYSG
101: RPRSDSATTS SSSHSQPLLS SSSSSATSPA PTSPANVLPT GNICPSGKIQ ITGMTQSRSR SDVLGSGTGT YGHGSIMRGG GISPAKPTNT GGGSNSPVNV
201: GSSSRSSSTV ATGETPIWKK AILGSDSEEV KRVGNEMYRK GLFNEALKLY DRAIALSPTN AAYRSNRAAA LIGLSRIGEA VKECEDAVRS DPNYGRAHHR
301: LALLLIRLGQ VNSARKHLCF LGRPSDPMEL QKLEAVEKHL IKCVDARRVT DWKTVLIEAD AAIVSGADFS PQLFMCKVEA FLKLHRLDDA QSKLLEVPKV
401: EPFPVSCSQT RFSGMACEAY IYFVKAQIEM ALGRFENAVM AAEKASQIDP RCNEVAMLHN TVTLVARARA RGNDLYKSER YTEASSAYAE GLRLDPCNAI
501: LYCNRAACWF KLGMWERSIE DCNQALRYQP SYTKPLLRRA ASNSKMERWG AAVSDYEALI RELPHDKEVA ESLFHAQVAL KKSRGEEVLN MEFGGEVEEI
601: YSLEQFKSAM NLPGVSVIHF STASDHQCKQ ISPFVDSLCT RYPSIHFLKV DIDKCPSIGN AENVRVVPTV KIYKNGSRVK EIVCPSKEVL EYSVRHYSG
Arabidopsis Description
TTL1TPR repeat-containing thioredoxin TTL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.