Factsheet for TraesCS3B01G455000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, golgi
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 19786127
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62120.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT3G62120.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT3G62120.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT3G62120.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT3G62120.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT3G62120.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT3G62120.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT3G62120.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT3G62120.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G419600.1	Wheat	cytosol	99.21	99.21
TraesCS3D01G415200.1	Wheat	cytosol, golgi	99.01	99.01
TraesCS1B01G342200.1	Wheat	cytosol, golgi	98.02	98.02
HORVU3Hr1G093050.2	Barley	cytosol	98.42	96.88
EES19704	Sorghum	cytosol	90.5	89.96
EES15248	Sorghum	cytosol	90.3	89.76
Zm00001d053196_P001	Maize	cytosol	89.7	89.17
Os12t0443700-01	Rice	cytosol	88.51	87.65
TraesCS7B01G107300.1	Wheat	cytosol	81.39	83.37
Zm00001d002585_P004	Maize	cytosol	85.35	82.41
PGSC0003DMT400073336	Potato	cytosol	80.59	79.03
Solyc06g068320.2.1	Tomato	cytosol, extracellular, nucleus	80.4	78.83
KRH68339	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	79.41	77.86
KRG96602	Soybean	cytosol	79.41	77.86
GSMUA_Achr3P28360_001	Banana	cytosol	18.02	77.78
PGSC0003DMT400036645	Potato	cytosol	77.43	77.73
Bra007663.1-P	Field mustard	cytosol	78.81	77.58
Solyc03g117330.2.1	Tomato	cytosol	77.43	77.58
CDX76618	Canola	cytosol	79.01	77.48
VIT_07s0005g02620.t01	Wine grape	cytosol	79.01	77.33
Bra003487.1-P	Field mustard	cytosol	75.64	76.4
AT3G62120.1	Thale cress	cytosol	78.22	74.53
GSMUA_Achr4P09390_001	Banana	cytosol	80.59	74.0
CDY25092	Canola	cytosol	78.42	73.33
CDX67878	Canola	cytosol	78.22	72.88
Bra003486.1-P	Field mustard	cytosol	65.54	71.8
CDY11404	Canola	cytosol, mitochondrion, plastid, vacuole	79.21	71.56
CDX67877	Canola	cytosol	58.22	67.28
CDY30246	Canola	cytosol	20.79	64.42
CDY25091	Canola	cytosol	55.64	64.3
CDY30248	Canola	cytosol	18.22	63.45
CDY05739	Canola	cytosol	14.85	63.03
KRH16405	Soybean	cytosol	16.24	61.19
Bra017510.1-P	Field mustard	cytosol	17.43	60.69
Bra029197.1-P	Field mustard	cytosol	25.54	59.17
CDX94184	Canola	cytosol, endoplasmic reticulum	16.24	58.16
CDY33873	Canola	cytosol	13.86	57.85
Bra028248.1-P	Field mustard	cytosol	60.99	57.25
Bra008444.1-P	Field mustard	cytosol	17.23	56.49
Bra037949.1-P	Field mustard	mitochondrion	16.44	56.46
CDY67326	Canola	cytosol	16.63	56.38
Bra037950.1-P	Field mustard	cytosol	12.87	54.17
AT5G10880.1	Thale cress	cytosol	32.87	53.72
CDX74456	Canola	cytosol	34.85	52.38
CDY30241	Canola	cytosol	35.45	51.73
TraesCS2B01G270500.1	Wheat	mitochondrion	40.59	37.89
KRH33484	Soybean	plastid	27.52	36.68

Protein Annotations

KEGG:00970+6.1.1.15	MapMan:17.2.17	Gene3D:3.30.110.30	Gene3D:3.30.930.10	Gene3D:3.40.50.800	InterPro:Anticodon-bd
InterPro:Anticodon-bd_dom_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004827
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006433	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR006195	InterPro:IPR017449	InterPro:IPR036621
HAMAP:MF_01571	PFAM:PF00587	PFAM:PF03129	PFAM:PF09180	PRINTS:PR01046	PFscan:PS50862
PANTHER:PTHR43382	PANTHER:PTHR43382:SF2	InterPro:Pro-tRNA-ligase_IIa	InterPro:Pro-tRNA-ligase_IIa_arc-type	InterPro:Pro-tRNA_ligase_II_C	InterPro:Pro-tRNA_synth_II
InterPro:ProRS_core_arch_euk	SMART:SM00946	SUPFAM:SSF52954	SUPFAM:SSF55681	SUPFAM:SSF64586	TIGRFAMs:TIGR00408
EnsemblPlantsGene:TraesCS3B01G455000	EnsemblPlants:TraesCS3B01G455000.1	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	TIGR:cd00778	TIGR:cd00862
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:+:696731332..696739866

Molecular Weight (calculated)

57480.9 Da

IEP (calculated)

6.986

GRAVY (calculated)

-0.403

Length

505 amino acids

Sequence
(BLAST)

001: MSTNKGGGGG KKKKEVKKET KLGMGYKKDD NFGEWYSEVV VNSEMIEYYD ISGCYILRPW AMEIWELLKE FFDAEIKKLK LKPYYFPLFV TESVLQKEKD
101: HIEGFAPEVA WVTKSGKSDL EAPIAIRPTS ETVMYPYFSK WIRSHRDLPL KCNQWCNVVR WEFSNPTPFI RSREFLWQEG HTVFATKEEA DEEVLQILEL
201: YRRIYEEFLA VPVSKGRKSE MEKFAGGLYT TSVEAFIPNT GRGIQGATSH CLGQNFAKMF DITFENEKGE RSMVWQNSWA YTTRSIGVMI MTHGDDKGLV
301: LPPKVAPIQV IVIPVPFKDA DTTAIKGACE SAVYTLNQAG IRADLDAREN YSPGWKYSQW EMKGVPLRIE IGPKDLANKQ VRIVRRDNGT KVDIPSTDLV
401: EQVRVLLDGI QVNLLETAKA KRDACIKIIS TWDEFIAALN DKKLILAPWC DEEEVEKDVK ARTKGELGAA KTLCTPFDQP DLPSGTVCFA SGKPAQKWSF
501: WGRSY

Best Arabidopsis Sequence Match ( AT3G62120.3 )
(BLAST)

001: MADPSEQKEK VVKEKVAKAS SSGQKKKDVK KETGLGLSVK KDENFGEWYS EVCKQDMIEY YDISGCYILR PWSMAIWEIM QIFFDAEIKK MKVKNCYFPL
101: FVSPGVLEKE KDHIEGFAPE VAWVTKSGKS DLEVPIAIRP TSETVMYPYY SKWIRGHRDL PLKLNQWCNV VRWEFSNPTP FIRSREFLWQ EGHTAFATKA
201: EADEEVLQIL ELYRRIYEEY LAVPVVKGMK SENEKFAGGL YTTSVEAFIP NTGRGVQGAT SHCLGQNFAK MFEINFENEK AETEMVWQNS WAYSTRTIGV
301: MIMTHGDDKG LVLPPKVASV QVVVIPVPYK DANTQGIYDA CTATASALCE AGIRAEEDLR DNYSPGWKYS DWEMKGVPLR IEIGPRDLEN DQVRTVRRDN
401: GVKEDIPRGS LVEHVKELLE KIQQNMYEVA KQKREACVQE VKTWDEFIKA LNEKKLILAP WCDEEEVERD VKARTKGETG AAKTLCSPFD QPELPEGTLC
501: FASGKPAKKW TYWGRSY

Arabidopsis Description

Proline--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.