Factsheet for Bra003486.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67877	Canola	cytosol	89.15	94.05
CDY25091	Canola	cytosol	85.47	90.16
Bra007663.1-P	Field mustard	cytosol	77.44	69.59
GSMUA_Achr3P28360_001	Banana	cytosol	17.57	69.23
Bra003487.1-P	Field mustard	cytosol	73.32	67.6
Bra017510.1-P	Field mustard	cytosol	21.26	67.59
PGSC0003DMT400073336	Potato	cytosol	74.19	66.41
Solyc06g068320.2.1	Tomato	cytosol, extracellular, nucleus	73.97	66.21
Bra029197.1-P	Field mustard	cytosol	31.24	66.06
PGSC0003DMT400036645	Potato	cytosol	72.02	66.0
TraesCS3D01G415200.1	Wheat	cytosol, golgi	72.02	65.74
TraesCS3B01G455000.1	Wheat	cytosol, extracellular, golgi	71.8	65.54
KRG96602	Soybean	cytosol	73.1	65.44
TraesCS1B01G342200.1	Wheat	cytosol, golgi	71.58	65.35
Solyc03g117330.2.1	Tomato	cytosol	71.37	65.28
KRH68339	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	72.89	65.24
Zm00001d053196_P001	Maize	cytosol	71.8	65.16
EES15248	Sorghum	cytosol	71.8	65.16
TraesCS3A01G419600.1	Wheat	cytosol	71.37	65.15
VIT_07s0005g02620.t01	Wine grape	cytosol	72.67	64.92
EES19704	Sorghum	cytosol	70.93	64.37
HORVU3Hr1G093050.2	Barley	cytosol	71.58	64.33
TraesCS1D01G210600.3	Wheat	cytosol	71.37	64.13
Os12t0443700-01	Rice	cytosol	70.72	63.92
Bra008444.1-P	Field mustard	cytosol	21.26	63.64
Bra037950.1-P	Field mustard	cytosol	16.49	63.33
Bra037949.1-P	Field mustard	mitochondrion	19.96	62.59
TraesCS7A01G200500.1	Wheat	cytosol	65.51	61.51
TraesCS7B01G107300.1	Wheat	cytosol	65.73	61.46
TraesCS7D01G203800.1	Wheat	cytosol	65.08	61.1
GSMUA_Achr4P09390_001	Banana	cytosol	72.89	61.09
Zm00001d002585_P004	Maize	cytosol	67.68	59.66
HORVU7Hr1G041110.1	Barley	cytosol	63.56	58.72
Bra028248.1-P	Field mustard	cytosol	65.29	55.95
KRH16405	Soybean	cytosol	15.18	52.24
HORVU4Hr1G079480.1	Barley	cytosol	3.69	48.57
Bra028313.1-P	Field mustard	cytosol	32.1	36.27
Bra022597.1-P	Field mustard	plastid	41.21	35.06
KRH33484	Soybean	plastid	24.73	30.08

Protein Annotations

KEGG:00970+6.1.1.15	MapMan:17.2.17	Gene3D:3.30.110.30	Gene3D:3.30.930.10	Gene3D:3.40.50.800	InterPro:Anticodon-bd
InterPro:Anticodon-bd_dom_sf	EnsemblPlantsGene:Bra003486	EnsemblPlants:Bra003486.1	EnsemblPlants:Bra003486.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004812	GO:GO:0004827	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418
GO:GO:0006433	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR006195	InterPro:IPR017449	InterPro:IPR036621	UniProt:M4CH03	HAMAP:MF_01571	PFAM:PF00587
PFAM:PF03129	PFAM:PF09180	PRINTS:PR01046	PFscan:PS50862	PANTHER:PTHR43382	PANTHER:PTHR43382:SF2
InterPro:Pro-tRNA-ligase_IIa	InterPro:Pro-tRNA-ligase_IIa_arc-type	InterPro:Pro-tRNA_ligase_II_C	InterPro:Pro-tRNA_synth_II	InterPro:ProRS_core_arch_euk	SMART:SM00946
SUPFAM:SSF52954	SUPFAM:SSF55681	SUPFAM:SSF64586	TIGRFAMs:TIGR00408	UniParc:UPI00025418DA	InterPro:aa-tRNA-synt_IIb
InterPro:aa-tRNA-synth_II	SEG:seg	:	:	:	:

Description

AT3G62120 (E=5e-209) | tRNA synthetase class II (G, H, P and S) family protein

Coordinates

chrA07:-:13443537..13445611

Molecular Weight (calculated)

52683.1 Da

IEP (calculated)

7.775

GRAVY (calculated)

-0.430

Length

461 amino acids

Sequence
(BLAST)

001: MMAYYDISGC YILRPNAMKI WNIMRTYFDA VLEKAEVDEN YFPLFVSASV LEKEKDHVQG FAPEVAWVTK AGKSDLNVPI AIRPTSETVI YPYFSKWIKS
101: HRDLPLKLNQ WNNVVRWEFS KPTPFIRSRE FLWQEGHTAH ATEEDADNEV LEVLDHYRHL YEEYLAVPVV KGMKSENEKF AGARYTTSVE AFIPETGRGI
201: QGATSHCLGT KFAKMFDIKF TNKEGKNELV WQNSWAYSTR TIGVMIMTHG DDKGLVNPPK VAPIQVIVIP VPFKDADTKE ISKACCAVKD ALREAGIRAK
301: EDLSDNYSPK WKYSHWEMKG VPLRIEIGPR DLAKNQVRTV RRDNGVKADV PRVGLVEHVK ELLGKIQQNM FDVAKQKRDD ACVVVKTWDE FVEALGQKKL
401: ILAPWCDEAE VEMDVKRRTK DEVGAAKTLC SPFDQPEIPE GTLCFASGKL AKKWTYWGKS Y

Best Arabidopsis Sequence Match ( AT3G62120.2 )
(BLAST)

001: MADPSEQKEK VVKEKKEKVK KEKVVKEKVA KASSSGQKKK DVKKETGLGL SVKKDENFGE WYSEVCKQDM IEYYDISGCY ILRPWSMAIW EIMQIFFDAE
101: IKKMKVKNCY FPLFVSPGVL EKEKDHIEGF APEVAWVTKS GKSDLEVPIA IRPTSETVMY PYYSKWIRGH RDLPLKLNQW CNVVRWEFSN PTPFIRSREF
201: LWQEGHTAFA TKAEADEEVL QILELYRRIY EEYLAVPVVK GMKSENEKFA GGLYTTSVEA FIPNTGRGVQ GATSHCLGQN FAKMFEINFE NEKAETEMVW
301: QNSWAYSTRT IGVMIMTHGD DKGLVLPPKV ASVQVVVIPV PYKDANTQGI YDACTATASA LCEAGIRAEE DLRDNYSPGW KYSDWEMKGV PLRIEIGPRD
401: LENDQVRTVR RDNGVKEDIP RGSLVEHVKE LLEKIQQNMY EVAKQKREAC VQEVKTWDEF IKALNEKKLI LAPWCDEEEV ERDVKARTKG ETGAAKTLCS
501: PFDQPELPEG TLCFASGKPA KKWTYWGRSY

Arabidopsis Description

Proline--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.