Factsheet for Bra003487.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000267.1-P
Bra004709.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62120.1	Bra000267.1-P	AT2G42580.1	19000166
AT3G62120.1	Bra004709.1-P	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25092	Canola	cytosol	98.4	91.11
CDX67878	Canola	cytosol	98.2	90.59
Bra007663.1-P	Field mustard	cytosol	92.6	90.25
AT3G62120.1	Thale cress	cytosol	91.6	86.42
GSMUA_Achr3P28360_001	Banana	cytosol	19.4	82.91
KRG96602	Soybean	cytosol	81.6	79.22
KRH68339	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	81.6	79.22
Solyc06g068320.2.1	Tomato	cytosol, extracellular, nucleus	81.6	79.22
PGSC0003DMT400073336	Potato	cytosol	81.4	79.03
PGSC0003DMT400036645	Potato	cytosol	78.6	78.13
Solyc03g117330.2.1	Tomato	cytosol	77.6	76.98
VIT_07s0005g02620.t01	Wine grape	cytosol	78.8	76.36
TraesCS3D01G415200.1	Wheat	cytosol, golgi	76.6	75.84
TraesCS1B01G342200.1	Wheat	cytosol, golgi	76.4	75.64
TraesCS3B01G455000.1	Wheat	cytosol, extracellular, golgi	76.4	75.64
TraesCS3A01G419600.1	Wheat	cytosol	76.2	75.45
EES15248	Sorghum	cytosol	76.6	75.39
Zm00001d053196_P001	Maize	cytosol	76.0	74.8
EES19704	Sorghum	cytosol	75.8	74.61
HORVU3Hr1G093050.2	Barley	cytosol	76.4	74.46
Os12t0443700-01	Rice	cytosol	75.8	74.31
TraesCS1D01G210600.3	Wheat	cytosol	76.0	74.07
Bra003486.1-P	Field mustard	cytosol	67.6	73.32
GSMUA_Achr4P09390_001	Banana	cytosol	77.0	70.0
KRH16405	Soybean	cytosol	18.4	68.66
Zm00001d002585_P004	Maize	cytosol	71.4	68.26
TraesCS7D01G203800.1	Wheat	cytosol	66.6	67.82
TraesCS7A01G200500.1	Wheat	cytosol	66.4	67.62
TraesCS7B01G107300.1	Wheat	cytosol	66.4	67.34
HORVU7Hr1G041110.1	Barley	cytosol	65.8	65.93
HORVU4Hr1G079480.1	Barley	cytosol	4.4	62.86
Bra008444.1-P	Field mustard	cytosol	17.4	56.49
Bra028248.1-P	Field mustard	cytosol	60.2	55.95
Bra029197.1-P	Field mustard	cytosol	24.2	55.5
Bra037949.1-P	Field mustard	mitochondrion	16.2	55.1
Bra037950.1-P	Field mustard	cytosol	13.2	55.0
Bra017510.1-P	Field mustard	cytosol	15.8	54.48
KRH33484	Soybean	plastid	28.2	37.2
Bra022597.1-P	Field mustard	plastid	39.0	35.98
Bra028313.1-P	Field mustard	cytosol	29.0	35.54

Protein Annotations

KEGG:00970+6.1.1.15	MapMan:17.2.17	Gene3D:3.30.110.30	Gene3D:3.30.930.10	Gene3D:3.40.50.800	InterPro:Anticodon-bd
InterPro:Anticodon-bd_dom_sf	EnsemblPlantsGene:Bra003487	EnsemblPlants:Bra003487.1	EnsemblPlants:Bra003487.1-P	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004827	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0006418	GO:GO:0006433	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR006195	InterPro:IPR017449	InterPro:IPR036621	UniProt:M4CH04	HAMAP:MF_01571
PFAM:PF00587	PFAM:PF03129	PFAM:PF09180	PRINTS:PR01046	PFscan:PS50862	PANTHER:PTHR43382
PANTHER:PTHR43382:SF2	InterPro:Pro-tRNA-ligase_IIa	InterPro:Pro-tRNA-ligase_IIa_arc-type	InterPro:Pro-tRNA_ligase_II_C	InterPro:Pro-tRNA_synth_II	InterPro:ProRS_core_arch_euk
SMART:SM00946	SUPFAM:SSF52954	SUPFAM:SSF55681	SUPFAM:SSF64586	TIGRFAMs:TIGR00408	UniParc:UPI00025418DB
InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	SEG:seg	:	:	:

Description

AT3G62120 (E=4e-257) | tRNA synthetase class II (G, H, P and S) family protein

Coordinates

chrA07:-:13447216..13449697

Molecular Weight (calculated)

57217.3 Da

IEP (calculated)

5.984

GRAVY (calculated)

-0.549

Length

500 amino acids

Sequence
(BLAST)

001: MAGASGKKEK VDKAGPSGGG KKKKDVKKET GLGLSVKKDE NFGEWYSEVC KHEMIEYYDI SGCYILRPWS MAIWEIMQTF FDAEIKKMKV KNCYFPLFVS
101: PGVLEKEKDH IEGFAPEVAW VTKSGKSDLE VPIAIRPTSE TVMYPYYSKW IRGHRDLPLK LNQWCNVVRW EFSNPTPFIR SREFLWQEGH TAFATKEEAD
201: EEVLQILELY RRIYEEYLAV PVVKGMKSEN EKFAGGLYTT SVEAFIPNTG RGVQGATSHC LGQNFAKMFE IRYEDEEGKR EMVWQNSWAY STRTIGVMIM
301: THGDDKGLIL PPKVASVQVV VIPVPYKDAN TQGIFDACTA TVSALSEAGI RAEEDLRDNY SPGWKYSNWE MKGVPLRIEI GPRDLENDQV RTVRRDNGVK
401: EDIPRGSLVE HVKELLEKIQ QNMYEVAKQK REACVQEIRT WDEFISALNL KKLILAPWCD EEEVERDVKA RTKGETGAAK TLCSPFEQPE LPEGHKQRTF

Best Arabidopsis Sequence Match ( AT3G62120.3 )
(BLAST)

001: MADPSEQKEK VVKEKVAKAS SSGQKKKDVK KETGLGLSVK KDENFGEWYS EVCKQDMIEY YDISGCYILR PWSMAIWEIM QIFFDAEIKK MKVKNCYFPL
101: FVSPGVLEKE KDHIEGFAPE VAWVTKSGKS DLEVPIAIRP TSETVMYPYY SKWIRGHRDL PLKLNQWCNV VRWEFSNPTP FIRSREFLWQ EGHTAFATKA
201: EADEEVLQIL ELYRRIYEEY LAVPVVKGMK SENEKFAGGL YTTSVEAFIP NTGRGVQGAT SHCLGQNFAK MFEINFENEK AETEMVWQNS WAYSTRTIGV
301: MIMTHGDDKG LVLPPKVASV QVVVIPVPYK DANTQGIYDA CTATASALCE AGIRAEEDLR DNYSPGWKYS DWEMKGVPLR IEIGPRDLEN DQVRTVRRDN
401: GVKEDIPRGS LVEHVKELLE KIQQNMYEVA KQKREACVQE VKTWDEFIKA LNEKKLILAP WCDEEEVERD VKARTKGETG AAKTLCSPFD QPELPEGTLC
501: FASGKPAKKW TYWGRSY

Arabidopsis Description

Proline--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.