Factsheet for Zm00001d002585_P004

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d033961_P001
Zm00001d039362_P002
Zm00001d044479_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62120.1	Zm00001d004494_P001	AT2G42580.1	19000166
AT3G62120.1	Zm00001d006366_P001	AT2G42580.1	19000166
AT3G62120.1	Zm00001d008930_P003	AT2G42580.1	19000166
AT3G62120.1	Zm00001d009724_P009	AT2G42580.1	19000166
AT3G62120.1	Zm00001d011352_P001	AT2G42580.1	19000166
AT3G62120.1	Zm00001d033961_P001	AT2G42580.1	19000166
AT3G62120.1	Zm00001d039362_P002	AT2G42580.1	19000166
AT3G62120.1	Zm00001d044479_P001	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15248	Sorghum	cytosol	88.34	90.94
Zm00001d053196_P001	Maize	cytosol	87.38	89.96
TraesCS3A01G419600.1	Wheat	cytosol	82.6	85.54
TraesCS1B01G342200.1	Wheat	cytosol, golgi	82.6	85.54
TraesCS3D01G415200.1	Wheat	cytosol, golgi	82.41	85.35
TraesCS3B01G455000.1	Wheat	cytosol, extracellular, golgi	82.41	85.35
HORVU3Hr1G093050.2	Barley	cytosol	82.98	84.6
TraesCS1D01G210600.3	Wheat	cytosol	82.79	84.41
Os12t0443700-01	Rice	cytosol	80.88	82.94
TraesCS7A01G200500.1	Wheat	cytosol	73.23	78.0
TraesCS7D01G203800.1	Wheat	cytosol	72.85	77.6
TraesCS7B01G107300.1	Wheat	cytosol	72.85	77.28
GSMUA_Achr3P28360_001	Banana	cytosol	17.21	76.92
PGSC0003DMT400073336	Potato	cytosol	75.14	76.31
Solyc06g068320.2.1	Tomato	cytosol, extracellular, nucleus	74.95	76.12
HORVU7Hr1G041110.1	Barley	cytosol	72.47	75.95
PGSC0003DMT400036645	Potato	cytosol	72.28	75.15
Solyc03g117330.2.1	Tomato	cytosol	71.51	74.21
KRH68339	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	72.66	73.79
KRG96602	Soybean	cytosol	72.47	73.59
Bra007663.1-P	Field mustard	cytosol	71.32	72.71
VIT_07s0005g02620.t01	Wine grape	cytosol	71.51	72.48
CDX76618	Canola	cytosol	71.13	72.23
Bra003487.1-P	Field mustard	cytosol	68.26	71.4
AT3G62120.1	Thale cress	cytosol	71.51	70.57
GSMUA_Achr4P09390_001	Banana	cytosol	73.23	69.64
CDY25092	Canola	cytosol	71.51	69.26
CDX67878	Canola	cytosol	71.51	69.0
Bra003486.1-P	Field mustard	cytosol	59.66	67.68
CDY11404	Canola	cytosol, mitochondrion, plastid, vacuole	71.13	66.55
CDX67877	Canola	cytosol	52.2	62.47
CDY30248	Canola	cytosol	17.21	62.07
Bra017510.1-P	Field mustard	cytosol	16.83	60.69
CDY25091	Canola	cytosol	50.1	59.95
Bra029197.1-P	Field mustard	cytosol	24.28	58.26
Bra037950.1-P	Field mustard	cytosol	12.43	54.17
AT5G10880.1	Thale cress	cytosol	31.55	53.4
CDY30246	Canola	cytosol	16.63	53.37
Bra028248.1-P	Field mustard	cytosol	54.49	52.97
CDX74456	Canola	cytosol	32.7	50.89
CDY30241	Canola	cytosol	33.08	50.0
KRH16405	Soybean	cytosol	12.62	49.25
CDY05739	Canola	cytosol	11.09	48.74
CDX94184	Canola	cytosol, endoplasmic reticulum	12.43	46.1
Bra008444.1-P	Field mustard	cytosol	13.38	45.45
CDY67326	Canola	cytosol	12.81	44.97
Bra037949.1-P	Field mustard	mitochondrion	12.62	44.9
CDY33873	Canola	cytosol	10.32	44.63
Zm00001d018870_P001	Maize	plastid	38.24	37.24
KRH33484	Soybean	plastid	23.33	32.19

Protein Annotations

KEGG:00970+6.1.1.15	MapMan:17.2.17	Gene3D:3.30.110.30	Gene3D:3.30.930.10	Gene3D:3.40.50.800	UniProt:A0A1D6E223
InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812
GO:GO:0004827	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006433	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016874	GO:GO:0019538	InterPro:IPR006195
InterPro:IPR017449	InterPro:IPR036621	HAMAP:MF_01571	ProteinID:ONM14711.1	PFAM:PF00587	PFAM:PF03129
PFAM:PF09180	PFscan:PS50862	PANTHER:PTHR43382	PANTHER:PTHR43382:SF2	InterPro:Pro-tRNA-ligase_IIa_arc-type	InterPro:Pro-tRNA_ligase_II_C
InterPro:Pro-tRNA_synth_II	InterPro:ProRS_core_arch_euk	SMART:SM00946	SUPFAM:SSF52954	SUPFAM:SSF55681	SUPFAM:SSF64586
TIGRFAMs:TIGR00408	UniParc:UPI000842F2E1	EnsemblPlantsGene:Zm00001d002585	EnsemblPlants:Zm00001d002585_P004	EnsemblPlants:Zm00001d002585_T004	InterPro:aa-tRNA-synt_IIb
InterPro:aa-tRNA-synth_II	SEG:seg	:	:	:	:

Description

Proline--tRNA ligase cytoplasmic

Coordinates

chr2:-:16083702..16098398

Molecular Weight (calculated)

59777.8 Da

IEP (calculated)

8.360

GRAVY (calculated)

-0.340

Length

523 amino acids

Sequence
(BLAST)

001: MSTSKGSAAK GGGGSNTSFA IVLYRHPWVL FASELAWSRM AGKKKEVKKE TKLGMAYRKD DNFGEWYSEV VVNSEMIEYY DISGCYILRP WAMEIWELMK
101: EFFDAEIKKL KLKPYYFPLF VTENVLQKEK DHIEGFAPEV AWVTKSGKSD LEAPIAIRPT SETVMYPYFS KWIRSHRDLP LRCNQWCNVV RWEFSNPTPF
201: IRYLICWLAN IVLQILELYR RIYEEFLAVP VSKGRKSEVE KFAGGLYTTS VEAFIPNTGR GIQGATSHCL GQNFAKMFDI TFENEKGVRE MVWQNSWAYT
301: TRSIGVMVMT HGDDKGLVLP PKVAPIQVIV ISVPYKDADT TAIKGACEST VYTLNQSGIR ADQDTRENYS PGWKYSHWEM KGVPLRIEIG PKDLANKQVR
401: IVRRDNGAKV DIPVTNLVED VKVLLDEIQK NLFKTAQERR DACVQVVSSW DEFTTALNNK RLILAPWCDE EEVEKDVKAR TKGELGAAKT LCTPFEQPEL
501: PEGILCFASG KPAKKWSFWG RSY

Best Arabidopsis Sequence Match ( AT3G62120.2 )
(BLAST)

001: MADPSEQKEK VVKEKKEKVK KEKVVKEKVA KASSSGQKKK DVKKETGLGL SVKKDENFGE WYSEVCKQDM IEYYDISGCY ILRPWSMAIW EIMQIFFDAE
101: IKKMKVKNCY FPLFVSPGVL EKEKDHIEGF APEVAWVTKS GKSDLEVPIA IRPTSETVMY PYYSKWIRGH RDLPLKLNQW CNVVRWEFSN PTPFIRSREF
201: LWQEGHTAFA TKAEADEEVL QILELYRRIY EEYLAVPVVK GMKSENEKFA GGLYTTSVEA FIPNTGRGVQ GATSHCLGQN FAKMFEINFE NEKAETEMVW
301: QNSWAYSTRT IGVMIMTHGD DKGLVLPPKV ASVQVVVIPV PYKDANTQGI YDACTATASA LCEAGIRAEE DLRDNYSPGW KYSDWEMKGV PLRIEIGPRD
401: LENDQVRTVR RDNGVKEDIP RGSLVEHVKE LLEKIQQNMY EVAKQKREAC VQEVKTWDEF IKALNEKKLI LAPWCDEEEV ERDVKARTKG ETGAAKTLCS
501: PFDQPELPEG TLCFASGKPA KKWTYWGRSY

Arabidopsis Description

Proline--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.