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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus, cytosol

Predictor Summary:
  • cytosol 6
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, mitochondrion, nucleus
Any Predictor:cytosol, mitochondrion
BaCelLo:cytosol
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol, mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH22291
KRH27037

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G62120.1 KRH22291 AT2G42580.1 19000166
AT3G62120.1 KRH27037 AT2G42580.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG96602 Soybean cytosol 99.03 99.03
PGSC0003DMT400036645 Potato cytosol 82.14 84.1
Solyc03g117330.2.1 Tomato cytosol 81.55 83.33
PGSC0003DMT400073336 Potato cytosol 83.3 83.3
Solyc06g068320.2.1 Tomato cytosol, extracellular, nucleus 82.91 82.91
Bra007663.1-P Field mustard cytosol 82.52 82.85
VIT_07s0005g02620.t01 Wine grape cytosol 82.72 82.56
CDX76618 Canola cytosol 82.14 82.14
Bra003487.1-P Field mustard cytosol 79.22 81.6
GSMUA_Achr3P28360_001 Banana cytosol 18.25 80.34
EES15248 Sorghum cytosol 79.22 80.31
EES19704 Sorghum cytosol 78.64 79.72
AT3G62120.1 Thale cress cytosol 81.94 79.62
TraesCS1B01G342200.1 Wheat cytosol, golgi 77.86 79.41
TraesCS3A01G419600.1 Wheat cytosol 77.86 79.41
TraesCS3B01G455000.1 Wheat cytosol, extracellular, golgi 77.86 79.41
TraesCS3D01G415200.1 Wheat cytosol, golgi 77.86 79.41
Zm00001d053196_P001 Maize cytosol 78.06 79.13
HORVU3Hr1G093050.2 Barley cytosol 78.64 78.95
CDY25092 Canola cytosol 82.52 78.7
TraesCS1D01G210600.3 Wheat cytosol 78.25 78.56
CDX67878 Canola cytosol 82.33 78.23
Os12t0443700-01 Rice cytosol 76.5 77.25
CDY11404 Canola cytosol, mitochondrion, plastid, vacuole 82.33 75.85
GSMUA_Achr4P09390_001 Banana cytosol 80.19 75.09
TraesCS7A01G200500.1 Wheat cytosol 69.51 72.91
Bra003486.1-P Field mustard cytosol 65.24 72.89
Zm00001d002585_P004 Maize cytosol 73.79 72.66
TraesCS7B01G107300.1 Wheat cytosol 69.51 72.62
KRH16405 Soybean cytosol 18.84 72.39
TraesCS7D01G203800.1 Wheat cytosol 68.74 72.1
HORVU4Hr1G079480.1 Barley cytosol 4.85 71.43
HORVU7Hr1G041110.1 Barley cytosol 68.16 70.34
CDX67877 Canola cytosol 58.45 68.88
CDY25091 Canola cytosol 55.92 65.9
CDY30248 Canola cytosol 18.45 65.52
Bra017510.1-P Field mustard cytosol 17.48 62.07
CDY30246 Canola cytosol 19.61 61.96
Bra029197.1-P Field mustard cytosol 25.44 60.09
CDY05739 Canola cytosol 13.59 58.82
CDX94184 Canola cytosol, endoplasmic reticulum 15.92 58.16
Bra028248.1-P Field mustard cytosol 59.42 56.88
CDY33873 Canola cytosol 13.01 55.37
Bra008444.1-P Field mustard cytosol 16.5 55.19
CDY67326 Canola cytosol 15.92 55.03
AT5G10880.1 Thale cress cytosol 33.01 55.02
Bra037949.1-P Field mustard mitochondrion 15.53 54.42
Bra037950.1-P Field mustard cytosol 12.62 54.17
CDX74456 Canola cytosol 33.79 51.79
CDY30241 Canola cytosol 33.59 50.0
KRH33484 Soybean plastid 31.07 42.22
KRH08879 Soybean plastid 39.81 37.55
KRH38393 Soybean plastid 39.42 37.18
Protein Annotations
KEGG:00970+6.1.1.15EntrezGene:100816763MapMan:17.2.17Gene3D:3.30.110.30Gene3D:3.30.930.10Gene3D:3.40.50.800
EMBL:ACUP02002107InterPro:Anticodon-bdInterPro:Anticodon-bd_dom_sfEnsemblPlantsGene:GLYMA_03G224500GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004812GO:GO:0004827GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006139GO:GO:0006412GO:GO:0006418
GO:GO:0006433GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0017101
GO:GO:0019538UniProt:I1JQX3InterPro:IPR006195InterPro:IPR017449InterPro:IPR036621EnsemblPlants:KRH68339
ProteinID:KRH68339ProteinID:KRH68339.1HAMAP:MF_01571PFAM:PF00587PFAM:PF03129PFAM:PF09180
PRINTS:PR01046PFscan:PS50862PANTHER:PTHR43382PANTHER:PTHR43382:SF2InterPro:Pro-tRNA-ligase_IIaInterPro:Pro-tRNA-ligase_IIa_arc-type
InterPro:Pro-tRNA_ligase_II_CInterPro:Pro-tRNA_synth_IIInterPro:ProRS_core_arch_eukSMART:SM00946SUPFAM:SSF52954SUPFAM:SSF55681
SUPFAM:SSF64586TIGRFAMs:TIGR00408UniParc:UPI0002339D71InterPro:aa-tRNA-synt_IIbInterPro:aa-tRNA-synth_IISEG:seg
Description
hypothetical protein
Coordinates
chr3:+:42676170..42680978
Molecular Weight (calculated)
58617.0 Da
IEP (calculated)
6.429
GRAVY (calculated)
-0.453
Length
515 amino acids
Sequence
(BLAST)
001: MAGTEAKKTE SKKPAAKQSG GKKKEVKKET GLGLTHRKAE NFGEWYSEVV VNAEMIEYYD ISGCYILRPW SMAIWEIMQE FFDPEIKKMK IKNCYFPLFV
101: SPGVLQKEKD HVEGFAPEVA WVTKSGESEL EIPIAIRPTS ETVMYPYYSK WIRGHRDLPL KLNQWCNVVR WEFSNPTPFI RSREFLWQEG HTAFASKEEA
201: DAEVLEILEL YRRIYEEYLA VPVIKGKKSE LEKFAGGLYT TSVEAFIPNT GRGIQGATSH CLGQNFAKMF EINFENEKGE RAMVWQNSWA YSTRTIGVMV
301: MVHGDDKGLV LPPKVASVQV IVIPVPYKDA DTQGIFDACS ATVNTLNEAG IRAESDSRDN YSPGWKYSNW EMKGVPLRIE IGPKDLANKQ VRAVRRDNGA
401: KIDIASADLV VEIKKLLDTI QQNLFDVAKQ KRDECIQIIH TWDEFVQALN QRKMIFAPWC DEEEVEADVK ARTKGEMGAA KTLCSPFDQP ELPEGTKCFA
501: SGKPATKWTY WGRSY
Best Arabidopsis Sequence Match ( AT3G62120.2 )
(BLAST)
001: MADPSEQKEK VVKEKKEKVK KEKVVKEKVA KASSSGQKKK DVKKETGLGL SVKKDENFGE WYSEVCKQDM IEYYDISGCY ILRPWSMAIW EIMQIFFDAE
101: IKKMKVKNCY FPLFVSPGVL EKEKDHIEGF APEVAWVTKS GKSDLEVPIA IRPTSETVMY PYYSKWIRGH RDLPLKLNQW CNVVRWEFSN PTPFIRSREF
201: LWQEGHTAFA TKAEADEEVL QILELYRRIY EEYLAVPVVK GMKSENEKFA GGLYTTSVEA FIPNTGRGVQ GATSHCLGQN FAKMFEINFE NEKAETEMVW
301: QNSWAYSTRT IGVMIMTHGD DKGLVLPPKV ASVQVVVIPV PYKDANTQGI YDACTATASA LCEAGIRAEE DLRDNYSPGW KYSDWEMKGV PLRIEIGPRD
401: LENDQVRTVR RDNGVKEDIP RGSLVEHVKE LLEKIQQNMY EVAKQKREAC VQEVKTWDEF IKALNEKKLI LAPWCDEEEV ERDVKARTKG ETGAAKTLCS
501: PFDQPELPEG TLCFASGKPA KKWTYWGRSY
Arabidopsis Description
Proline--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1R2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.