Factsheet for Solyc06g068320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073336	Potato	cytosol	99.22	99.22
Solyc03g117330.2.1	Tomato	cytosol	88.35	90.28
KRG96602	Soybean	cytosol	83.11	83.11
Bra007663.1-P	Field mustard	cytosol	82.72	83.04
KRH68339	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	82.91	82.91
GSMUA_Achr3P28360_001	Banana	cytosol	18.84	82.91
EES15248	Sorghum	cytosol	81.36	82.48
CDX76618	Canola	cytosol	82.33	82.33
Zm00001d053196_P001	Maize	cytosol	80.78	81.89
Bra003487.1-P	Field mustard	cytosol	79.22	81.6
VIT_07s0005g02620.t01	Wine grape	cytosol	81.75	81.59
EES19704	Sorghum	cytosol	80.39	81.5
AT3G62120.1	Thale cress	cytosol	83.3	80.94
TraesCS3D01G415200.1	Wheat	cytosol, golgi	79.03	80.59
TraesCS3B01G455000.1	Wheat	cytosol, extracellular, golgi	78.83	80.4
TraesCS1B01G342200.1	Wheat	cytosol, golgi	78.83	80.4
TraesCS3A01G419600.1	Wheat	cytosol	78.64	80.2
Os12t0443700-01	Rice	cytosol	79.42	80.2
HORVU3Hr1G093050.2	Barley	cytosol	79.22	79.53
TraesCS1D01G210600.3	Wheat	cytosol	78.83	79.14
CDY25092	Canola	cytosol	82.72	78.89
CDX67878	Canola	cytosol	82.52	78.41
CDY11404	Canola	cytosol, mitochondrion, plastid, vacuole	82.52	76.03
GSMUA_Achr4P09390_001	Banana	cytosol	80.39	75.27
Zm00001d002585_P004	Maize	cytosol	76.12	74.95
HORVU4Hr1G079480.1	Barley	cytosol	5.05	74.29
Bra003486.1-P	Field mustard	cytosol	66.21	73.97
TraesCS7A01G200500.1	Wheat	cytosol	70.29	73.73
TraesCS7D01G203800.1	Wheat	cytosol	70.1	73.52
TraesCS7B01G107300.1	Wheat	cytosol	70.29	73.43
HORVU7Hr1G041110.1	Barley	cytosol	68.74	70.94
CDX67877	Canola	cytosol	59.03	69.57
KRH16405	Soybean	cytosol	17.48	67.16
CDY25091	Canola	cytosol	56.31	66.36
CDY30248	Canola	cytosol	18.45	65.52
Bra017510.1-P	Field mustard	cytosol	17.67	62.76
CDY30246	Canola	cytosol	19.81	62.58
Bra029197.1-P	Field mustard	cytosol	25.63	60.55
CDY05739	Canola	cytosol	13.59	58.82
Bra028248.1-P	Field mustard	cytosol	60.58	57.99
CDX94184	Canola	cytosol, endoplasmic reticulum	15.73	57.45
AT5G10880.1	Thale cress	cytosol	33.98	56.63
CDY33873	Canola	cytosol	13.2	56.2
Bra008444.1-P	Field mustard	cytosol	16.31	54.55
CDY67326	Canola	cytosol	15.73	54.36
CDX74456	Canola	cytosol	34.95	53.57
Bra037949.1-P	Field mustard	mitochondrion	15.15	53.06
Bra037950.1-P	Field mustard	cytosol	12.23	52.5
CDY30241	Canola	cytosol	34.95	52.02
KRH33484	Soybean	plastid	28.16	38.26
Solyc01g096870.2.1	Tomato	plastid	39.81	37.48

Protein Annotations

KEGG:00970+6.1.1.15	MapMan:17.2.17	Gene3D:3.30.110.30	Gene3D:3.30.930.10	Gene3D:3.40.50.800	InterPro:Anticodon-bd
InterPro:Anticodon-bd_dom_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004827
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006433	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0017101	GO:GO:0019538	InterPro:IPR006195	InterPro:IPR017449
InterPro:IPR036621	UniProt:K4C807	HAMAP:MF_01571	PFAM:PF00587	PFAM:PF03129	PFAM:PF09180
PRINTS:PR01046	PFscan:PS50862	PANTHER:PTHR43382	PANTHER:PTHR43382:SF2	InterPro:Pro-tRNA-ligase_IIa	InterPro:Pro-tRNA-ligase_IIa_arc-type
InterPro:Pro-tRNA_ligase_II_C	InterPro:Pro-tRNA_synth_II	InterPro:ProRS_core_arch_euk	SMART:SM00946	SUPFAM:SSF52954	SUPFAM:SSF55681
SUPFAM:SSF64586	EnsemblPlantsGene:Solyc06g068320.2	EnsemblPlants:Solyc06g068320.2.1	TIGRFAMs:TIGR00408	UniParc:UPI0002766396	InterPro:aa-tRNA-synt_IIb
InterPro:aa-tRNA-synth_II	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:42320107..42327819

Molecular Weight (calculated)

58565.8 Da

IEP (calculated)

6.640

GRAVY (calculated)

-0.494

Length

515 amino acids

Sequence
(BLAST)

001: MAGKDGDKGK KKEGKKEVVH GKKKEVKKET GLGLSYKKDE NFGEWYSEVV VSGEMIEYYD ISGCYILRPW AMSIWEILQT FFDAEIKKMK IKNSYFPLFV
101: SPAVLQKEKD HIEGFAPEVA WVTKSGDSDL EVPIAIRPTS ETVMYPYFSK WIRGHRDLPL RLNQWCNVVR WEFSNPTPFI RSREFLWQEG HTAFATKEEA
201: DEEVLDILEL YRRIYEEFLA VPVSKGKKSE LEKFAGGLYT TTVEAFIPNT GRGIQGATSH CLGQNFAKMF EINFENEKGE KAMVWQNSWA YTTRTIGVMI
301: MTHGDDKGLV LPPKVATTQV VVIPVPYKDA NTQGIYDACA ATVKSLNESG IRAEADFRDN YSPGWKYSHW EMKGVPLRIE IGPKDLANNQ VRAVRRDNGA
401: KTDIPVANLV EQVKDVLDSI QQNLFETAKQ KREACVQVVK TWEEFAEALG QKKLILAPWC DEEDVEKEVK ARTKGEMGAA KTLCSPFDQP ELPEGTLCFA
501: SGKSAKKWTY WGRSY

Best Arabidopsis Sequence Match ( AT3G62120.2 )
(BLAST)

001: MADPSEQKEK VVKEKKEKVK KEKVVKEKVA KASSSGQKKK DVKKETGLGL SVKKDENFGE WYSEVCKQDM IEYYDISGCY ILRPWSMAIW EIMQIFFDAE
101: IKKMKVKNCY FPLFVSPGVL EKEKDHIEGF APEVAWVTKS GKSDLEVPIA IRPTSETVMY PYYSKWIRGH RDLPLKLNQW CNVVRWEFSN PTPFIRSREF
201: LWQEGHTAFA TKAEADEEVL QILELYRRIY EEYLAVPVVK GMKSENEKFA GGLYTTSVEA FIPNTGRGVQ GATSHCLGQN FAKMFEINFE NEKAETEMVW
301: QNSWAYSTRT IGVMIMTHGD DKGLVLPPKV ASVQVVVIPV PYKDANTQGI YDACTATASA LCEAGIRAEE DLRDNYSPGW KYSDWEMKGV PLRIEIGPRD
401: LENDQVRTVR RDNGVKEDIP RGSLVEHVKE LLEKIQQNMY EVAKQKREAC VQEVKTWDEF IKALNEKKLI LAPWCDEEEV ERDVKARTKG ETGAAKTLCS
501: PFDQPELPEG TLCFASGKPA KKWTYWGRSY

Arabidopsis Description

Proline--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.