Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G093390.2 | |
| HORVU3Hr1G027650.2 | |
| HORVU3Hr1G054240.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G62120.1 | HORVU1Hr1G093390.2 | AT2G42580.1 | 19000166 |
| AT3G62120.1 | HORVU3Hr1G027650.2 | AT2G42580.1 | 19000166 |
| AT3G62120.1 | HORVU3Hr1G054240.2 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P28360_001 | Banana | cytosol | 54.29 | 16.24 |
| KRH16405 | Soybean | cytosol | 54.29 | 14.18 |
| KRH33484 | Soybean | plastid | 65.71 | 6.07 |
| HORVU3Hr1G093050.2 | Barley | cytosol | 88.57 | 6.04 |
| HORVU7Hr1G041110.1 | Barley | cytosol | 82.86 | 5.81 |
| Solyc06g068320.2.1 | Tomato | cytosol, extracellular, nucleus | 74.29 | 5.05 |
| PGSC0003DMT400073336 | Potato | cytosol | 74.29 | 5.05 |
| PGSC0003DMT400036645 | Potato | cytosol | 71.43 | 4.97 |
| Solyc03g117330.2.1 | Tomato | cytosol | 71.43 | 4.96 |
| GSMUA_Achr4P09390_001 | Banana | cytosol | 77.14 | 4.91 |
| KRH68339 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 71.43 | 4.85 |
| KRG96602 | Soybean | cytosol | 71.43 | 4.85 |
| VIT_07s0005g02620.t01 | Wine grape | cytosol | 65.71 | 4.46 |
| Bra003487.1-P | Field mustard | cytosol | 62.86 | 4.4 |
| Bra007663.1-P | Field mustard | cytosol | 62.86 | 4.29 |
| CDX76618 | Canola | cytosol | 62.86 | 4.27 |
| CDY05739 | Canola | cytosol | 14.29 | 4.2 |
| CDX74456 | Canola | cytosol | 40.0 | 4.17 |
| CDX67877 | Canola | cytosol | 51.43 | 4.12 |
| CDY25092 | Canola | cytosol | 62.86 | 4.07 |
| CDX67878 | Canola | cytosol | 62.86 | 4.06 |
| CDY30241 | Canola | cytosol | 40.0 | 4.05 |
| AT3G62120.1 | Thale cress | cytosol | 60.0 | 3.96 |
| CDY11404 | Canola | cytosol, mitochondrion, plastid, vacuole | 62.86 | 3.94 |
| CDY25091 | Canola | cytosol | 48.57 | 3.89 |
| Bra003486.1-P | Field mustard | cytosol | 48.57 | 3.69 |
| AT5G10880.1 | Thale cress | cytosol | 28.57 | 3.24 |
| Bra028248.1-P | Field mustard | cytosol | 40.0 | 2.6 |
| HORVU2Hr1G057880.3 | Barley | mitochondrion | 25.71 | 1.66 |
| CDX94184 | Canola | cytosol, endoplasmic reticulum | 5.71 | 1.42 |
| CDY33873 | Canola | cytosol | 2.86 | 0.83 |
| CDY67326 | Canola | cytosol | 2.86 | 0.67 |
| Bra008444.1-P | Field mustard | cytosol | 2.86 | 0.65 |
| Bra037950.1-P | Field mustard | cytosol | 0.0 | 0.0 |
| Bra037949.1-P | Field mustard | mitochondrion | 0.0 | 0.0 |
| Bra029197.1-P | Field mustard | cytosol | 0.0 | 0.0 |
| Bra017510.1-P | Field mustard | cytosol | 0.0 | 0.0 |
| CDY30248 | Canola | cytosol | 0.0 | 0.0 |
| CDY30246 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G079480.1 | EnsemblPlantsGene:HORVU4Hr1G079480 | Gene3D:3.30.930.10 | PANTHER:PTHR43382 | PANTHER:PTHR43382:SF2 | UniParc:UPI000B476EA9 |
| UniProt:A0A287PT97 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:-:612596936..612597041
Molecular Weight (calculated)
4252.2 Da
IEP (calculated)
3.987
GRAVY (calculated)
0.534
Length
35 amino acids
Sequence
(BLAST)
(BLAST)
1: LFVQVVVNSE MIEYYDISGC YILRPWAMEI WELLK
001: MADPSEQKEK VVKEKVAKAS SSGQKKKDVK KETGLGLSVK KDENFGEWYS EVCKQDMIEY YDISGCYILR PWSMAIWEIM QIFFDAEIKK MKVKNCYFPL
101: FVSPGVLEKE KDHIEGFAPE VAWVTKSGKS DLEVPIAIRP TSETVMYPYY SKWIRGHRDL PLKLNQWCNV VRWEFSNPTP FIRSREFLWQ EGHTAFATKA
201: EADEEVLQIL ELYRRIYEEY LAVPVVKGMK SENEKFAGGL YTTSVEAFIP NTGRGVQGAT SHCLGQNFAK MFEINFENEK AETEMVWQNS WAYSTRTIGV
301: MIMTHGDDKG LVLPPKVASV QVVVIPVPYK DANTQGIYDA CTATASALCE AGIRAEEDLR DNYSPGWKYS DWEMKGVPLR IEIGPRDLEN DQVRTVRRDN
401: GVKEDIPRGS LVEHVKELLE KIQQNMYEVA KQKREACVQE VKTWDEFIKA LNEKKLILAP WCDEEEVERD VKARTKGETG AAKTLCSPFD QPELPEGTLC
501: FASGKPAKKW TYWGRSY
101: FVSPGVLEKE KDHIEGFAPE VAWVTKSGKS DLEVPIAIRP TSETVMYPYY SKWIRGHRDL PLKLNQWCNV VRWEFSNPTP FIRSREFLWQ EGHTAFATKA
201: EADEEVLQIL ELYRRIYEEY LAVPVVKGMK SENEKFAGGL YTTSVEAFIP NTGRGVQGAT SHCLGQNFAK MFEINFENEK AETEMVWQNS WAYSTRTIGV
301: MIMTHGDDKG LVLPPKVASV QVVVIPVPYK DANTQGIYDA CTATASALCE AGIRAEEDLR DNYSPGWKYS DWEMKGVPLR IEIGPRDLEN DQVRTVRRDN
401: GVKEDIPRGS LVEHVKELLE KIQQNMYEVA KQKREACVQE VKTWDEFIKA LNEKKLILAP WCDEEEVERD VKARTKGETG AAKTLCSPFD QPELPEGTLC
501: FASGKPAKKW TYWGRSY
Arabidopsis Description
Proline--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1R2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.