CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22291
KRH27037

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62120.1	KRH22291	AT2G42580.1	19000166
AT3G62120.1	KRH27037	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G079480.1	Barley	cytosol	14.18	54.29
GSMUA_Achr3P28360_001	Banana	cytosol	36.57	41.88
KRH33484	Soybean	plastid	78.36	27.7
CDY30246	Canola	cytosol	31.34	25.77
CDY05739	Canola	cytosol	22.39	25.21
CDY33873	Canola	cytosol	20.9	23.14
CDX94184	Canola	cytosol, endoplasmic reticulum	21.64	20.57
KRG96602	Soybean	cytosol	73.88	19.22
KRH68339	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	72.39	18.84
CDY67326	Canola	cytosol	20.9	18.79
Bra003487.1-P	Field mustard	cytosol	68.66	18.4
PGSC0003DMT400036645	Potato	cytosol	68.66	18.29
Bra008444.1-P	Field mustard	cytosol	20.9	18.18
Bra007663.1-P	Field mustard	cytosol	69.4	18.13
Solyc03g117330.2.1	Tomato	cytosol	67.91	18.06
VIT_07s0005g02620.t01	Wine grape	cytosol	69.4	18.02
CDX76618	Canola	cytosol	68.66	17.86
Bra037949.1-P	Field mustard	mitochondrion	19.4	17.69
PGSC0003DMT400073336	Potato	cytosol	67.16	17.48
Solyc06g068320.2.1	Tomato	cytosol, extracellular, nucleus	67.16	17.48
AT3G62120.1	Thale cress	cytosol	68.66	17.36
CDY25092	Canola	cytosol	68.66	17.04
CDX67878	Canola	cytosol	68.66	16.97
CDY11404	Canola	cytosol, mitochondrion, plastid, vacuole	69.4	16.64
Zm00001d053196_P001	Maize	cytosol	61.94	16.34
EES19704	Sorghum	cytosol	61.94	16.34
EES15248	Sorghum	cytosol	61.94	16.34
Os12t0443700-01	Rice	cytosol	61.94	16.27
TraesCS3D01G415200.1	Wheat	cytosol, golgi	61.19	16.24
TraesCS3B01G455000.1	Wheat	cytosol, extracellular, golgi	61.19	16.24
TraesCS3A01G419600.1	Wheat	cytosol	61.19	16.24
TraesCS1B01G342200.1	Wheat	cytosol, golgi	61.19	16.24
HORVU3Hr1G093050.2	Barley	cytosol	61.19	15.98
TraesCS1D01G210600.3	Wheat	cytosol	61.19	15.98
TraesCS7D01G203800.1	Wheat	cytosol	57.46	15.68
TraesCS7A01G200500.1	Wheat	cytosol	57.46	15.68
TraesCS7B01G107300.1	Wheat	cytosol	57.46	15.62
GSMUA_Achr4P09390_001	Banana	cytosol	63.43	15.45
HORVU7Hr1G041110.1	Barley	cytosol	57.46	15.43
Bra003486.1-P	Field mustard	cytosol	52.24	15.18
CDX67877	Canola	cytosol	48.51	14.87
CDY25091	Canola	cytosol	46.27	14.19
Zm00001d002585_P004	Maize	cytosol	49.25	12.62
Bra028248.1-P	Field mustard	cytosol	38.81	9.67
Bra037950.1-P	Field mustard	cytosol	8.21	9.17
KRH38393	Soybean	plastid	32.84	8.06
KRH08879	Soybean	plastid	32.84	8.06
CDY30241	Canola	cytosol	16.42	6.36
AT5G10880.1	Thale cress	cytosol	10.45	4.53
CDX74456	Canola	cytosol	11.19	4.46
CDY30248	Canola	cytosol	0.75	0.69
Bra017510.1-P	Field mustard	cytosol	0.0	0.0
Bra029197.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.30.930.10	MapMan:35.1	EMBL:ACUP02008879	EnsemblPlantsGene:GLYMA_14G153800	GO:GO:0003674	GO:GO:0003824
GO:GO:0004827	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006412	GO:GO:0006433	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0017101	GO:GO:0019538	UniProt:K7M6Z2	EnsemblPlants:KRH16405	ProteinID:KRH16405	ProteinID:KRH16405.1
PANTHER:PTHR43382	PANTHER:PTHR43382:SF2	SUPFAM:SSF55681	UniParc:UPI00029652CF	:	:

Description

hypothetical protein

Coordinates

chr14:+:33489733..33490926

Molecular Weight (calculated)

15978.2 Da

IEP (calculated)

4.263

GRAVY (calculated)

-0.056

Length

134 amino acids

Sequence
(BLAST)

001: MVEYYDISGC YILRPWSMAI WEIMQFFDPE IKKMKIKTCY FPLFVSPEIL QKEKDHVEDF APEVRVCESV GPCNVDCSIS YFDFRSRQFL WQEGHTAFAT
101: KDEADAEVFE ILELYRCIYE EYLAVLRYMS DILA

Best Arabidopsis Sequence Match ( AT3G62120.1 )
(BLAST)

001: MADPSEQKEK VVKEKKEKVK KEKVVKEKVA KASSSGQKKK DVKKETGLGL SVKKDENFGE WYSEVCKQDM IEYYDISGCY ILRPWSMAIW EIMQIFFDAE
101: IKKMKVKNCY FPLFVSPGVL EKEKDHIEGF APEVAWVTKS GKSDLEVPIA IRPTSETVMY PYYSKWIRGH RDLPLKLNQW CNVVRWEFSN PTPFIRSREF
201: LWQEGHTAFA TKAEADEEVL QILELYRRIY EEYLAVPVVK GMKSENEKFA GGLYTTSVEA FIPNTGRGVQ GATSHCLGQN FAKMFEINFE NEKAETEMVW
301: QNSWAYSTRT IGVMIMTHGD DKGLVLPPKV ASVQVVVIPV PYKDANTQGI YDACTATASA LCEAGIRAEE DLRDNYSPGW KYSDWEMKGV PLRIEIGPRD
401: LENDQVRTVR RDNGVKEDIP RGSLVEHVKE LLEKIQQNMY EVAKQKREAC VQEVKTWDEF IKALNEKKLI LAPWCDEEEV ERDVKARTKG ETGAAKTLCS
501: PFDQPELPEG TLCFASGKPA KKWTYWGRSY

Arabidopsis Description

Proline--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.