CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, vacuole, cytosol

Predictor Summary:

cytosol 2
mitochondrion 3
plastid 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62120.1	CDY42827	AT2G42580.1	19000166
AT3G62120.1	CDY51514	AT2G42580.1	19000166
AT3G62120.1	CDY55390	AT2G42580.1	19000166
AT3G62120.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007663.1-P	Field mustard	cytosol	89.27	97.27
CDX76618	Canola	cytosol	89.09	96.7
AT3G62120.1	Thale cress	cytosol	85.87	90.57
CDX67878	Canola	cytosol	87.3	90.04
CDY25092	Canola	cytosol	86.58	89.63
GSMUA_Achr3P28360_001	Banana	cytosol	17.35	82.91
PGSC0003DMT400073336	Potato	cytosol	76.21	82.72
KRG96602	Soybean	cytosol	76.03	82.52
Solyc06g068320.2.1	Tomato	cytosol, extracellular, nucleus	76.03	82.52
PGSC0003DMT400036645	Potato	cytosol	74.24	82.5
KRH68339	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	75.85	82.33
Solyc03g117330.2.1	Tomato	cytosol	73.52	81.55
VIT_07s0005g02620.t01	Wine grape	cytosol	74.6	80.81
TraesCS3D01G415200.1	Wheat	cytosol, golgi	71.91	79.6
TraesCS1B01G342200.1	Wheat	cytosol, golgi	71.74	79.41
TraesCS3A01G419600.1	Wheat	cytosol	71.56	79.21
TraesCS3B01G455000.1	Wheat	cytosol, extracellular, golgi	71.56	79.21
EES15248	Sorghum	cytosol	71.56	78.74
Zm00001d053196_P001	Maize	cytosol	71.2	78.35
HORVU3Hr1G093050.2	Barley	cytosol	71.56	77.97
EES19704	Sorghum	cytosol	70.84	77.95
Os12t0443700-01	Rice	cytosol	70.84	77.65
TraesCS1D01G210600.3	Wheat	cytosol	71.2	77.58
GSMUA_Achr4P09390_001	Banana	cytosol	73.17	74.36
CDX67877	Canola	cytosol	56.89	72.77
Zm00001d002585_P004	Maize	cytosol	66.55	71.13
TraesCS7D01G203800.1	Wheat	cytosol	62.08	70.67
TraesCS7A01G200500.1	Wheat	cytosol	61.9	70.47
TraesCS7B01G107300.1	Wheat	cytosol	62.08	70.39
CDY25091	Canola	cytosol	54.38	69.57
KRH16405	Soybean	cytosol	16.64	69.4
CDY30248	Canola	cytosol	17.89	68.97
HORVU7Hr1G041110.1	Barley	cytosol	61.18	68.54
CDY30246	Canola	cytosol	18.78	64.42
CDY05739	Canola	cytosol	13.42	63.03
HORVU4Hr1G079480.1	Barley	cytosol	3.94	62.86
CDX94184	Canola	cytosol, endoplasmic reticulum	15.56	61.7
CDY33873	Canola	cytosol	12.88	59.5
CDY67326	Canola	cytosol	15.56	58.39
CDX74456	Canola	cytosol	33.63	55.95
CDY30241	Canola	cytosol	34.17	55.2
KRH33484	Soybean	plastid	26.65	39.31
CDY27824	Canola	mitochondrion, plastid	37.21	38.88
CDX91656	Canola	plastid	34.7	38.26
CDY27062	Canola	plastid	37.03	38.19
CDY00534	Canola	cytosol	25.4	35.95

Protein Annotations

KEGG:00970+6.1.1.15	MapMan:17.2.17	Gene3D:3.30.110.30	Gene3D:3.30.930.10	Gene3D:3.40.50.800	GO:A0A078FEM2
UniProt:A0A078FEM2	InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	EnsemblPlants:CDY11404	ProteinID:CDY11404	ProteinID:CDY11404.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004827	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006412	GO:GO:0006418	GO:GO:0006433	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00049468001	InterPro:IPR006195	InterPro:IPR017449	InterPro:IPR036621
HAMAP:MF_01571	PFAM:PF00587	PFAM:PF03129	PFAM:PF09180	PRINTS:PR01046	PFscan:PS50862
PANTHER:PTHR43382	PANTHER:PTHR43382:SF2	InterPro:Pro-tRNA-ligase_IIa	InterPro:Pro-tRNA-ligase_IIa_arc-type	InterPro:Pro-tRNA_ligase_II_C	InterPro:Pro-tRNA_synth_II
InterPro:ProRS_core_arch_euk	SMART:SM00946	SUPFAM:SSF52954	SUPFAM:SSF55681	SUPFAM:SSF64586	TIGRFAMs:TIGR00408
UniParc:UPI0004EE5C79	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	SEG:seg	:	:

Description

BnaA09g39700DBnaA09g39700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FEM2]

Coordinates

chrLK032011:-:249983..258600

Molecular Weight (calculated)

63713.5 Da

IEP (calculated)

6.437

GRAVY (calculated)

-0.469

Length

559 amino acids

Sequence
(BLAST)

001: MNFRVIFESK GLQVVTLLSP YLRRLQLLPP PLSLTIKEEE KVEMAGPSGK KEKVDKAGPS GGGGGKKKKD VKKETGLGLS VKKDENFGEW YSEVCKHEMI
101: EYYDISGCYI LRPWSMAIWE IMQTFFDAEI KKMKVKNCYF PLFVSPGVLE KEKDHIEGFA PEVAWVTKSG KSDLEVPIAI RPTSETVMYP YYSKWIRGHR
201: DLPLKLNQWC NVVRWEFSNP TPFIRSREFL WQEGHTAFAT KEEADKEVLE ILELYRRIYE EYLAVPVVKG MKSENEKFAG GLYTTSVEAF IPNTGRGVQG
301: ATSHCLGQNF AKMFEINFEN EKGETEMVWQ NSWAYSTRTI GVMIMTHGDD KGLILPPKVA SVQVVVIPVP YKDANTQGIF DACTATVAAL SEAGIRAEED
401: LRDNYSPGWK YSNWEMKGVP LRIEIGPRDL ENDQVRTVRR DNGVKEDIPR GSLVEHVKEL LEKIQANMYE VAKQKREACV EEIKTWDEFI VALNKKKLIL
501: APWCDEEEVE RDVKARTKGE TGAAKTLCSP FEQPELPEGT LCFASGKPAK KWTYWGRSY

Best Arabidopsis Sequence Match ( AT3G62120.3 )
(BLAST)

001: MADPSEQKEK VVKEKVAKAS SSGQKKKDVK KETGLGLSVK KDENFGEWYS EVCKQDMIEY YDISGCYILR PWSMAIWEIM QIFFDAEIKK MKVKNCYFPL
101: FVSPGVLEKE KDHIEGFAPE VAWVTKSGKS DLEVPIAIRP TSETVMYPYY SKWIRGHRDL PLKLNQWCNV VRWEFSNPTP FIRSREFLWQ EGHTAFATKA
201: EADEEVLQIL ELYRRIYEEY LAVPVVKGMK SENEKFAGGL YTTSVEAFIP NTGRGVQGAT SHCLGQNFAK MFEINFENEK AETEMVWQNS WAYSTRTIGV
301: MIMTHGDDKG LVLPPKVASV QVVVIPVPYK DANTQGIYDA CTATASALCE AGIRAEEDLR DNYSPGWKYS DWEMKGVPLR IEIGPRDLEN DQVRTVRRDN
401: GVKEDIPRGS LVEHVKELLE KIQQNMYEVA KQKREACVQE VKTWDEFIKA LNEKKLILAP WCDEEEVERD VKARTKGETG AAKTLCSPFD QPELPEGTLC
501: FASGKPAKKW TYWGRSY

Arabidopsis Description

Proline--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.