CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27062	Canola	plastid	98.62	92.25
GSMUA_Achr7P07770_001	Banana	cytosol	2.76	87.5
AT5G52520.1	Thale cress	plastid	93.1	86.92
CDY27824	Canola	mitochondrion, plastid	91.52	86.73
VIT_16s0050g00960.t01	Wine grape	cytosol	70.61	79.91
GSMUA_Achr5P23600_001	Banana	cytosol	68.05	77.01
Os07t0165000-01	Rice	cytosol, mitochondrion, plastid	54.24	72.94
KRH38393	Soybean	plastid	77.71	72.16
KRH08879	Soybean	plastid	77.51	71.98
EER95900	Sorghum	mitochondrion	75.15	71.89
Zm00001d018870_P001	Maize	plastid	75.35	71.14
PGSC0003DMT400070798	Potato	plastid	75.74	70.2
Solyc01g096870.2.1	Tomato	plastid	75.54	70.02
TraesCS2D01G248600.1	Wheat	mitochondrion	73.57	68.95
TraesCS2A01G246200.1	Wheat	mitochondrion	73.57	68.95
TraesCS2B01G270500.1	Wheat	mitochondrion	73.18	68.58
HORVU2Hr1G057880.3	Barley	mitochondrion	72.78	68.21
CDY00534	Canola	cytosol	52.07	66.84
CDY30246	Canola	cytosol	14.4	44.79
GSMUA_Achr7P07780_001	Banana	cytosol	12.23	42.18
CDY05739	Canola	cytosol	9.07	38.66
CDX94184	Canola	cytosol, endoplasmic reticulum	10.65	38.3
CDX67877	Canola	cytosol	31.95	37.07
CDX76618	Canola	cytosol	37.08	36.5
CDY25091	Canola	cytosol	30.57	35.47
CDY25092	Canola	cytosol	37.48	35.19
CDX67878	Canola	cytosol	37.48	35.06
CDY33873	Canola	cytosol	8.28	34.71
CDY11404	Canola	cytosol, mitochondrion, plastid, vacuole	38.26	34.7
CDY67326	Canola	cytosol	10.06	34.23
CDY30248	Canola	cytosol	7.89	27.59
CDX74456	Canola	cytosol	18.15	27.38
CDY30241	Canola	cytosol	18.54	27.17

Protein Annotations

KEGG:00970+6.1.1.15	MapMan:17.2.17	Gene3D:3.30.110.30	Gene3D:3.30.930.10	Gene3D:3.40.50.800	GO:A0A078DQT9
InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	EnsemblPlants:CDX91656	ProteinID:CDX91656	ProteinID:CDX91656.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004827	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0006418	GO:GO:0006433	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00153113001	InterPro:IPR006195	InterPro:IPR017449	InterPro:IPR036621	HAMAP:MF_01571
PFAM:PF00587	PFAM:PF03129	PFAM:PF09180	PRINTS:PR01046	PFscan:PS50862	PANTHER:PTHR43382
PANTHER:PTHR43382:SF3	InterPro:Pro-tRNA-ligase_IIa	InterPro:Pro-tRNA-ligase_IIa_arc-type	InterPro:Pro-tRNA_ligase_II_C	InterPro:Pro-tRNA_synth_II	InterPro:ProRS_core_arch_euk
SMART:SM00946	SUPFAM:SSF52954	SUPFAM:SSF55681	SUPFAM:SSF64586	TIGRFAMs:TIGR00408	UniParc:UPI0004EE0D78
InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	:	:	:	:

Description

BnaC02g15040D

Coordinates

chrLK031868:+:1525278..1528425

Molecular Weight (calculated)

56902.6 Da

IEP (calculated)

6.096

GRAVY (calculated)

-0.316

Length

507 amino acids

Sequence
(BLAST)

001: MVASLRLPSL TSLLFPATTR YPAALRRTLC LRNRPASGFA TAPSGTASPE TKSEVGRLPR SDQAVTPRSQ DFSAWYLDVI ASAELADYGP VRGTMVIRPY
101: GYAIWEAIQD YLNVKFKETG HSNMYFPQFI PYSFIEKEAS HVEGFSPELA LVTVGGGNEL EEKLVVRPTS ETIVNHMFTQ WIHSYRDLPL MINQWANVTR
201: WEMRTKPFIR TLEFLWQEGH TAHATPEEAE KEAKQMIEIY TRFAFEETAI PVIAGRKSKM ETFAGADTTY TIEAMMGDRK ALQAGTSHNL GQNFSRAFGT
301: QFQDENGERQ HVWQTSWAVS TRFVGGIIMT HGDDTGLMLP PKIAPIQVVI VPIWKKDTEK AEVLSAASSV KEVLQTAGVR VKLDDTTERT AGWKFNFWEM
401: KGVPIRIEIA YVKEKLDEIQ SSLLEKAISF RDSNIVDVNS YEELKAAISS GKWARGPWSA SDSDEQRVKE ETGATIRCFP FEQTLGSKTC LMTGNPAEEV
501: AIFAKSY

Best Arabidopsis Sequence Match ( AT5G52520.1 )
(BLAST)

001: MVSSSLRLPS LTSLLFPATT RYPATLRRTV CLRNRPLSGF ATAPSGTASP ETKSSEVDRL RSDRAVTPRS QDFNAWYLDV IASAELADYG PVRGTMVIRP
101: YGYAIWEAIQ DYLNVKFKET GHSNMYFPQF IPYSFIEKEA SHVEGFSPEL ALVTVGGGKE LEEKLVVRPT SETIVNHMFT QWIHSYRDLP LMINQWANVT
201: RWEMRTKPFI RTLEFLWQEG HTAHATPEEA EKEAKQMIEI YTRFAFEQTA IPVIPGRKSK LETFAGADIT YTIEAMMGDR KALQAGTSHN LGQNFSRAFG
301: TQFADENGER QHVWQTSWAV STRFVGGIIM THGDDTGLML PPKIAPIQVV IVPIWKKDTE KTGVLSAASS VKEALQTAGV RVKLDDTDQR TPGWKFNFWE
401: MKGIPLRIEI GPRDVSSNSV VVSRRDVPGK AGKVFGISME PSTLVAYVKE KLDEIQTSLL EKALSFRDSN IVDVNSYAEL KDAISSGKWA RGPWSASDAD
501: EQRVKEETGA TIRCFPFEQT QGTKTCLMTG NPAEEVAIFA KSY

Arabidopsis Description

OVA6Proline--tRNA ligase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.