CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P28360_001	Banana	cytosol	30.06	41.88
CDY05739	Canola	cytosol	25.15	34.45
CDY33873	Canola	cytosol	23.93	32.23
KRH16405	Soybean	cytosol	25.77	31.34
CDX94184	Canola	cytosol, endoplasmic reticulum	24.54	28.37
CDY67326	Canola	cytosol	23.93	26.17
TraesCS3D01G415200.1	Wheat	cytosol, golgi	64.42	20.79
TraesCS3B01G455000.1	Wheat	cytosol, extracellular, golgi	64.42	20.79
TraesCS1B01G342200.1	Wheat	cytosol, golgi	64.42	20.79
Zm00001d053196_P001	Maize	cytosol	64.42	20.67
TraesCS3A01G419600.1	Wheat	cytosol	63.8	20.59
Os12t0443700-01	Rice	cytosol	64.42	20.59
EES19704	Sorghum	cytosol	63.8	20.47
EES15248	Sorghum	cytosol	63.8	20.47
HORVU3Hr1G093050.2	Barley	cytosol	64.42	20.47
TraesCS1D01G210600.3	Wheat	cytosol	64.42	20.47
CDX76618	Canola	cytosol	64.42	20.39
TraesCS7D01G203800.1	Wheat	cytosol	61.35	20.37
PGSC0003DMT400036645	Potato	cytosol	62.58	20.28
TraesCS7B01G107300.1	Wheat	cytosol	60.12	19.88
Solyc03g117330.2.1	Tomato	cytosol	61.35	19.84
PGSC0003DMT400073336	Potato	cytosol	62.58	19.81
Solyc06g068320.2.1	Tomato	cytosol, extracellular, nucleus	62.58	19.81
VIT_07s0005g02620.t01	Wine grape	cytosol	62.58	19.77
TraesCS7A01G200500.1	Wheat	cytosol	59.51	19.76
KRG96602	Soybean	cytosol	61.96	19.61
KRH68339	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	61.96	19.61
CDY25092	Canola	cytosol	64.42	19.44
HORVU7Hr1G041110.1	Barley	cytosol	59.51	19.44
CDX67878	Canola	cytosol	64.42	19.37
CDY11404	Canola	cytosol, mitochondrion, plastid, vacuole	64.42	18.78
GSMUA_Achr4P09390_001	Banana	cytosol	60.74	18.0
CDX67877	Canola	cytosol	46.63	17.39
CDY25091	Canola	cytosol	45.4	16.93
Zm00001d002585_P004	Maize	cytosol	53.37	16.63
CDX91656	Canola	plastid	44.79	14.4
CDY27824	Canola	mitochondrion, plastid	45.4	13.83
CDY27062	Canola	plastid	44.79	13.47
CDY00534	Canola	cytosol	32.52	13.42
KRH33484	Soybean	plastid	24.54	10.55
CDY30241	Canola	cytosol	20.25	9.54
CDX74456	Canola	cytosol	10.43	5.06
AT5G10880.1	Thale cress	cytosol	1.23	0.65
HORVU4Hr1G079480.1	Barley	cytosol	0.0	0.0
CDY30248	Canola	cytosol	0.0	0.0

Protein Annotations

KEGG:00970+6.1.1.15	MapMan:17.2.17	Gene3D:3.30.930.10	GO:A0A078GXL3	UniProt:A0A078GXL3	EnsemblPlants:CDY30246
ProteinID:CDY30246	ProteinID:CDY30246.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812
GO:GO:0004827	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006433	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00044877001	InterPro:IPR006195
PFAM:PF00587	PRINTS:PR01046	PFscan:PS50862	PANTHER:PTHR43382	PANTHER:PTHR43382:SF2	InterPro:Pro-tRNA-ligase_IIa
SUPFAM:SSF55681	UniParc:UPI0004EE8198	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	SEG:seg	:

Description

BnaC04g31570DBnaC04g31570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXL3]

Coordinates

chrLK032251:+:32708..33199

Molecular Weight (calculated)

18863.4 Da

IEP (calculated)

4.994

GRAVY (calculated)

-0.606

Length

163 amino acids

Sequence
(BLAST)

001: MDAELEKLGG VEEKKFPMLI KRDSLEKEKD HIEGFKPEVA WVTRAGEHDL PTPYALRPTS ETIIYPYFKN RIRTHRDLPM KVNQWVNVVG WEVSDPIPLI
101: RGREFDWQEG HSAFATKEEA DEEVLEVLNI YSRVYEDLLA VPVIKGRKSD KEKFAGADYT TSV

Best Arabidopsis Sequence Match ( AT3G62120.1 )
(BLAST)

001: MADPSEQKEK VVKEKKEKVK KEKVVKEKVA KASSSGQKKK DVKKETGLGL SVKKDENFGE WYSEVCKQDM IEYYDISGCY ILRPWSMAIW EIMQIFFDAE
101: IKKMKVKNCY FPLFVSPGVL EKEKDHIEGF APEVAWVTKS GKSDLEVPIA IRPTSETVMY PYYSKWIRGH RDLPLKLNQW CNVVRWEFSN PTPFIRSREF
201: LWQEGHTAFA TKAEADEEVL QILELYRRIY EEYLAVPVVK GMKSENEKFA GGLYTTSVEA FIPNTGRGVQ GATSHCLGQN FAKMFEINFE NEKAETEMVW
301: QNSWAYSTRT IGVMIMTHGD DKGLVLPPKV ASVQVVVIPV PYKDANTQGI YDACTATASA LCEAGIRAEE DLRDNYSPGW KYSDWEMKGV PLRIEIGPRD
401: LENDQVRTVR RDNGVKEDIP RGSLVEHVKE LLEKIQQNMY EVAKQKREAC VQEVKTWDEF IKALNEKKLI LAPWCDEEEV ERDVKARTKG ETGAAKTLCS
501: PFDQPELPEG TLCFASGKPA KKWTYWGRSY

Arabidopsis Description

Proline--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.