CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67877	Canola	cytosol	94.51	94.51
Bra003486.1-P	Field mustard	cytosol	90.16	85.47
CDY30248	Canola	cytosol	22.88	68.97
CDY05739	Canola	cytosol	17.16	63.03
CDY33873	Canola	cytosol	16.93	61.16
CDX76618	Canola	cytosol	69.57	59.03
PGSC0003DMT400073336	Potato	cytosol	66.59	56.5
Solyc06g068320.2.1	Tomato	cytosol, extracellular, nucleus	66.36	56.31
KRG96602	Soybean	cytosol	66.13	56.12
PGSC0003DMT400036645	Potato	cytosol	64.53	56.06
CDX94184	Canola	cytosol, endoplasmic reticulum	18.08	56.03
CDY25092	Canola	cytosol	69.11	55.93
KRH68339	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	65.9	55.92
CDX67878	Canola	cytosol	69.34	55.9
TraesCS3D01G415200.1	Wheat	cytosol, golgi	64.53	55.84
EES15248	Sorghum	cytosol	64.76	55.71
TraesCS3B01G455000.1	Wheat	cytosol, extracellular, golgi	64.3	55.64
Zm00001d053196_P001	Maize	cytosol	64.53	55.51
TraesCS1B01G342200.1	Wheat	cytosol, golgi	64.07	55.45
VIT_07s0005g02620.t01	Wine grape	cytosol	65.45	55.43
Solyc03g117330.2.1	Tomato	cytosol	63.84	55.36
TraesCS3A01G419600.1	Wheat	cytosol	63.84	55.25
EES19704	Sorghum	cytosol	63.84	54.92
HORVU3Hr1G093050.2	Barley	cytosol	64.07	54.58
TraesCS1D01G210600.3	Wheat	cytosol	63.84	54.39
CDY11404	Canola	cytosol, mitochondrion, plastid, vacuole	69.57	54.38
Os12t0443700-01	Rice	cytosol	62.93	53.92
CDY67326	Canola	cytosol	18.31	53.69
TraesCS7A01G200500.1	Wheat	cytosol	59.5	52.95
TraesCS7B01G107300.1	Wheat	cytosol	59.5	52.74
TraesCS7D01G203800.1	Wheat	cytosol	58.81	52.34
GSMUA_Achr4P09390_001	Banana	cytosol	64.99	51.64
HORVU7Hr1G041110.1	Barley	cytosol	57.44	50.3
Zm00001d002585_P004	Maize	cytosol	59.95	50.1
CDX74456	Canola	cytosol	38.22	49.7
CDY30241	Canola	cytosol	38.9	49.13
HORVU4Hr1G079480.1	Barley	cytosol	3.89	48.57
KRH16405	Soybean	cytosol	14.19	46.27
CDY30246	Canola	cytosol	16.93	45.4
GSMUA_Achr3P28360_001	Banana	cytosol	11.44	42.73
CDY27824	Canola	mitochondrion, plastid	37.76	30.84
CDY27062	Canola	plastid	37.99	30.63
CDX91656	Canola	plastid	35.47	30.57
CDY00534	Canola	cytosol	27.0	29.87
KRH33484	Soybean	plastid	24.03	27.7

Protein Annotations

KEGG:00970+6.1.1.15	MapMan:17.2.17	Gene3D:3.30.110.30	Gene3D:3.30.930.10	Gene3D:3.40.50.800	GO:A0A078GIA6
UniProt:A0A078GIA6	InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	EnsemblPlants:CDY25091	ProteinID:CDY25091	ProteinID:CDY25091.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004827	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006412	GO:GO:0006418	GO:GO:0006433	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00028950001	InterPro:IPR006195	InterPro:IPR017449	InterPro:IPR036621
PFAM:PF00587	PFAM:PF03129	PFAM:PF09180	PFscan:PS50862	PANTHER:PTHR43382	InterPro:Pro-tRNA_ligase_II_C
InterPro:Pro-tRNA_synth_II	SMART:SM00946	SUPFAM:SSF52954	SUPFAM:SSF55681	SUPFAM:SSF64586	UniParc:UPI0004EE70E6
InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	SEG:seg	:	:	:

Description

BnaC06g18330DBnaC06g18330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GIA6]

Coordinates

chrLK032168:-:375187..378148

Molecular Weight (calculated)

50173.1 Da

IEP (calculated)

6.450

GRAVY (calculated)

-0.509

Length

437 amino acids

Sequence
(BLAST)

001: MKLSDNGILR CGEMMAYYDI SECYILRPNA MKIWNIMRTY FDAVLEKAEV DENYFPLFVS ASVLEKEKDH VQGCMGYKSC KWIKSHRDLP LELNQWNNVV
101: RWESREFLWQ EGHTAHATEE EADKEVLEVL DHYRHLYEEY LVVPVVKGMK SENEKFAGAR YTTSVEAFIP ETGRGIQGAT SHCLGTKFAK MFDIEFTNKE
201: GKNELVWQKE KNLETFVLAH EIMTHGDDKG LVNPPKVAPI QVIVIPVPFK DADTKEISKA CSAVKDALRE AGIRAKEDLS DNYSPKWKYS HWEIKGVPLR
301: IEIGPRDLAK KQVRTVRRDN GVKADVPRVG LVEHVKELLG KIQQNMFDVA KQKRDDACVV VKTWDEFVEA LGQKKLILAP WSDEEEVEMD VKRRTKDEVG
401: AAKTLCSPFD QPEIPEGTLC FASGKLAKKW TYWGKSY

Best Arabidopsis Sequence Match ( AT3G62120.1 )
(BLAST)

001: MADPSEQKEK VVKEKKEKVK KEKVVKEKVA KASSSGQKKK DVKKETGLGL SVKKDENFGE WYSEVCKQDM IEYYDISGCY ILRPWSMAIW EIMQIFFDAE
101: IKKMKVKNCY FPLFVSPGVL EKEKDHIEGF APEVAWVTKS GKSDLEVPIA IRPTSETVMY PYYSKWIRGH RDLPLKLNQW CNVVRWEFSN PTPFIRSREF
201: LWQEGHTAFA TKAEADEEVL QILELYRRIY EEYLAVPVVK GMKSENEKFA GGLYTTSVEA FIPNTGRGVQ GATSHCLGQN FAKMFEINFE NEKAETEMVW
301: QNSWAYSTRT IGVMIMTHGD DKGLVLPPKV ASVQVVVIPV PYKDANTQGI YDACTATASA LCEAGIRAEE DLRDNYSPGW KYSDWEMKGV PLRIEIGPRD
401: LENDQVRTVR RDNGVKEDIP RGSLVEHVKE LLEKIQQNMY EVAKQKREAC VQEVKTWDEF IKALNEKKLI LAPWCDEEEV ERDVKARTKG ETGAAKTLCS
501: PFDQPELPEG TLCFASGKPA KKWTYWGRSY

Arabidopsis Description

Proline--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.