Factsheet for TraesCS1D01G210600.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62120.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT3G62120.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT3G62120.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT3G62120.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT3G62120.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT3G62120.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT3G62120.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT3G62120.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT3G62120.1	TraesCS3D01G231300.1	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G342200.1	Wheat	cytosol, golgi	95.91	97.43
TraesCS3D01G415200.1	Wheat	cytosol, golgi	95.91	97.43
HORVU3Hr1G093050.2	Barley	cytosol	96.88	96.88
EES19704	Sorghum	cytosol	89.67	90.55
EES15248	Sorghum	cytosol	89.28	90.16
Zm00001d053196_P001	Maize	cytosol	88.89	89.76
Os12t0443700-01	Rice	cytosol	87.52	88.04
TraesCS7D01G203800.1	Wheat	cytosol	79.92	83.5
Zm00001d002585_P004	Maize	cytosol	84.41	82.79
PGSC0003DMT400073336	Potato	cytosol	79.34	79.03
Solyc06g068320.2.1	Tomato	cytosol, extracellular, nucleus	79.14	78.83
GSMUA_Achr3P28360_001	Banana	cytosol	17.93	78.63
KRH68339	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	78.56	78.25
KRG96602	Soybean	cytosol	78.36	78.06
PGSC0003DMT400036645	Potato	cytosol	76.41	77.93
CDX76618	Canola	cytosol	77.78	77.48
Solyc03g117330.2.1	Tomato	cytosol	76.02	77.38
Bra007663.1-P	Field mustard	cytosol	77.19	77.19
VIT_07s0005g02620.t01	Wine grape	cytosol	77.58	77.13
Bra003487.1-P	Field mustard	cytosol	74.07	76.0
AT3G62120.1	Thale cress	cytosol	76.61	74.15
GSMUA_Achr4P09390_001	Banana	cytosol	78.75	73.45
CDY25092	Canola	cytosol	76.8	72.96
CDX67878	Canola	cytosol	76.61	72.51
Bra003486.1-P	Field mustard	cytosol	64.13	71.37
CDY11404	Canola	cytosol, mitochondrion, plastid, vacuole	77.58	71.2
CDX67877	Canola	cytosol	56.92	66.82
CDY30246	Canola	cytosol	20.47	64.42
CDY25091	Canola	cytosol	54.39	63.84
CDY30248	Canola	cytosol	17.74	62.76
CDY05739	Canola	cytosol	14.43	62.18
KRH16405	Soybean	cytosol	15.98	61.19
Bra017510.1-P	Field mustard	cytosol	16.96	60.0
Bra029197.1-P	Field mustard	cytosol	24.95	58.72
Bra028248.1-P	Field mustard	cytosol	60.43	57.62
CDX94184	Canola	cytosol, endoplasmic reticulum	15.79	57.45
CDY33873	Canola	cytosol	13.45	57.02
Bra008444.1-P	Field mustard	cytosol	16.76	55.84
Bra037949.1-P	Field mustard	mitochondrion	15.98	55.78
CDY67326	Canola	cytosol	16.18	55.7
AT5G10880.1	Thale cress	cytosol	32.16	53.4
Bra037950.1-P	Field mustard	cytosol	12.48	53.33
CDX74456	Canola	cytosol	34.7	52.98
CDY30241	Canola	cytosol	35.28	52.31
TraesCS2D01G248600.1	Wheat	mitochondrion	39.77	37.71
KRH33484	Soybean	plastid	27.29	36.94

Protein Annotations

KEGG:00970+6.1.1.15	MapMan:17.2.17	Gene3D:3.30.110.30	Gene3D:3.30.930.10	Gene3D:3.40.50.800	InterPro:Anticodon-bd
InterPro:Anticodon-bd_dom_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004827
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006433	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR006195	InterPro:IPR017449	InterPro:IPR036621
HAMAP:MF_01571	PFAM:PF00587	PFAM:PF03129	PFAM:PF09180	PRINTS:PR01046	PFscan:PS50862
PANTHER:PTHR43382	PANTHER:PTHR43382:SF2	InterPro:Pro-tRNA-ligase_IIa	InterPro:Pro-tRNA-ligase_IIa_arc-type	InterPro:Pro-tRNA_ligase_II_C	InterPro:Pro-tRNA_synth_II
InterPro:ProRS_core_arch_euk	SMART:SM00946	SUPFAM:SSF52954	SUPFAM:SSF55681	SUPFAM:SSF64586	TIGRFAMs:TIGR00408
EnsemblPlantsGene:TraesCS1D01G210600	EnsemblPlants:TraesCS1D01G210600.3	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	TIGR:cd00778	TIGR:cd00862
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:296531362..296539599

Molecular Weight (calculated)

58285.8 Da

IEP (calculated)

6.404

GRAVY (calculated)

-0.370

Length

513 amino acids

Sequence
(BLAST)

001: MSAVVRDLAM STNKGGGGGK KKEVKKETKL GMAYKKDDNF GEWYSEVVVN SEMIEYYDIS GCYILRPWAM EIWELLKEFF DAEIKKLKLK PYYFPLFVTE
101: NVLQKEKDHI EGFAPEVAWV TKSGKSDLEA PIAIRPTSET VMYPYFSKWI RSHRDLPLKC NQWCNVVRWE FSNPTPFIRS REFLWQEGHT VFATKEEADE
201: EVLQILELYR RIYEEFLAVP VSKGRKSEME KFAGGLYTTS VEAFIPNTGR GIQGATSHCL GQNFAKMFDI TFENEKGERS MVWQNSWAYT TRSIGVMVMT
301: HGDDKGLVLP PKVAPIQVIV IPVPFKDADT TGIKGACESA VYTLNQAGIR ADLDARENYS PGWKYSQWEM KGVPLRIEIG PKDLANKQVR IVRRDNGTKV
401: DIPSTDLVEQ VRVLLDGFQA NLLETAKAKR DACIVIISTW DEFIAALNDK KLILAPWCDE EEVEKDVKAR TKGELGAAKT LCTPFDQPDL PSGTVCFASG
501: KPAQKWSFWG RSY

Best Arabidopsis Sequence Match ( AT3G62120.3 )
(BLAST)

001: MADPSEQKEK VVKEKVAKAS SSGQKKKDVK KETGLGLSVK KDENFGEWYS EVCKQDMIEY YDISGCYILR PWSMAIWEIM QIFFDAEIKK MKVKNCYFPL
101: FVSPGVLEKE KDHIEGFAPE VAWVTKSGKS DLEVPIAIRP TSETVMYPYY SKWIRGHRDL PLKLNQWCNV VRWEFSNPTP FIRSREFLWQ EGHTAFATKA
201: EADEEVLQIL ELYRRIYEEY LAVPVVKGMK SENEKFAGGL YTTSVEAFIP NTGRGVQGAT SHCLGQNFAK MFEINFENEK AETEMVWQNS WAYSTRTIGV
301: MIMTHGDDKG LVLPPKVASV QVVVIPVPYK DANTQGIYDA CTATASALCE AGIRAEEDLR DNYSPGWKYS DWEMKGVPLR IEIGPRDLEN DQVRTVRRDN
401: GVKEDIPRGS LVEHVKELLE KIQQNMYEVA KQKREACVQE VKTWDEFIKA LNEKKLILAP WCDEEEVERD VKARTKGETG AAKTLCSPFD QPELPEGTLC
501: FASGKPAKKW TYWGRSY

Arabidopsis Description

Proline--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.