Factsheet for Bra028248.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74456	Canola	cytosol	62.27	99.7
Bra017510.1-P	Field mustard	cytosol	25.09	93.1
Bra029197.1-P	Field mustard	cytosol	36.43	89.91
Bra003486.1-P	Field mustard	cytosol	55.95	65.29
Bra007663.1-P	Field mustard	cytosol	60.04	62.96
PGSC0003DMT400036645	Potato	cytosol	57.25	61.23
TraesCS3D01G415200.1	Wheat	cytosol, golgi	57.25	60.99
TraesCS3B01G455000.1	Wheat	cytosol, extracellular, golgi	57.25	60.99
PGSC0003DMT400073336	Potato	cytosol	58.36	60.97
Zm00001d053196_P001	Maize	cytosol	57.43	60.83
TraesCS3A01G419600.1	Wheat	cytosol	57.06	60.79
TraesCS1B01G342200.1	Wheat	cytosol, golgi	57.06	60.79
Os12t0443700-01	Rice	cytosol	57.62	60.78
Solyc06g068320.2.1	Tomato	cytosol, extracellular, nucleus	57.99	60.58
Solyc03g117330.2.1	Tomato	cytosol	56.69	60.52
VIT_07s0005g02620.t01	Wine grape	cytosol	57.99	60.47
TraesCS1D01G210600.3	Wheat	cytosol	57.62	60.43
HORVU3Hr1G093050.2	Barley	cytosol	57.62	60.43
EES19704	Sorghum	cytosol	56.88	60.24
Bra003487.1-P	Field mustard	cytosol	55.95	60.2
EES15248	Sorghum	cytosol	56.69	60.04
KRG96602	Soybean	cytosol	57.25	59.81
AT5G10880.1	Thale cress	cytosol	34.2	59.55
KRH68339	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	56.88	59.42
TraesCS7D01G203800.1	Wheat	cytosol	52.97	58.04
TraesCS7A01G200500.1	Wheat	cytosol	52.79	57.84
TraesCS7B01G107300.1	Wheat	cytosol	52.6	57.4
HORVU7Hr1G041110.1	Barley	cytosol	52.04	56.11
GSMUA_Achr4P09390_001	Banana	cytosol	56.51	55.27
Zm00001d002585_P004	Maize	cytosol	52.97	54.49
GSMUA_Achr3P28360_001	Banana	cytosol	11.15	51.28
Bra037950.1-P	Field mustard	cytosol	10.78	48.33
Bra037949.1-P	Field mustard	mitochondrion	13.01	47.62
Bra008444.1-P	Field mustard	cytosol	13.2	46.1
HORVU4Hr1G079480.1	Barley	cytosol	2.6	40.0
KRH16405	Soybean	cytosol	9.67	38.81
Bra028313.1-P	Field mustard	cytosol	28.07	37.01
Bra022597.1-P	Field mustard	plastid	36.8	36.53
KRH33484	Soybean	plastid	18.96	26.91

Protein Annotations

KEGG:00970+6.1.1.15	MapMan:17.2.17	Gene3D:3.30.110.30	Gene3D:3.30.930.10	Gene3D:3.40.50.800	InterPro:Anticodon-bd
InterPro:Anticodon-bd_dom_sf	EnsemblPlantsGene:Bra028248	EnsemblPlants:Bra028248.1	EnsemblPlants:Bra028248.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004812	GO:GO:0004827	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418
GO:GO:0006433	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR006195	InterPro:IPR017449	InterPro:IPR036621	UniProt:M4EHI3	HAMAP:MF_01571	PFAM:PF00587
PFAM:PF03129	PFAM:PF09180	PRINTS:PR01046	PFscan:PS50862	PANTHER:PTHR43382	PANTHER:PTHR43382:SF2
InterPro:Pro-tRNA-ligase_IIa	InterPro:Pro-tRNA-ligase_IIa_arc-type	InterPro:Pro-tRNA_ligase_II_C	InterPro:Pro-tRNA_synth_II	InterPro:ProRS_core_arch_euk	SMART:SM00946
SUPFAM:SSF52954	SUPFAM:SSF55681	SUPFAM:SSF64586	TIGRFAMs:TIGR00408	UniParc:UPI000254496E	InterPro:aa-tRNA-synt_IIb
InterPro:aa-tRNA-synth_II	SEG:seg	:	:	:	:

Description

AT5G52520 (E=4e-090) OVA6, PRORS1 | OVA6 (OVULE ABORTION 6); ATP binding / aminoacyl-tRNA ligase/ nucleotide binding / proline-tRNA ligase

Coordinates

chrA04:-:7097368..7098984

Molecular Weight (calculated)

61621.6 Da

IEP (calculated)

7.087

GRAVY (calculated)

-0.618

Length

538 amino acids

Sequence
(BLAST)

001: MSKSGREEDV GSSSSQSMVE KTLEVAKASV FGERKEKEMK KETRLGISAK KDEDFPSWYS QVCRFGELIT LSDTKGLYIL EPSATKIWNT LRSYMDAELE
101: KLGGVEEKKF PMLIKRDSLE KEKDHIEGFK PEVAWVTRAG EHDLPTPYAL RPTSETIIYP YFKNRIRTHR DLPMKVNQWV NVVRWEVSDP IPLIRGREFD
201: WQEGHSAFAT KEEADEEVLE VLNIYSRVYE DLLAVPVIKG RKSDKEKFAG ADYTTSAEAF IPTTGRGVQA ATSHCLGQNF AKMFEIAFED KEVKRDKKGK
301: IIKPLVWQNS WGVSTRSIGV MAMTHGDDKG LVLPPKVARY QVVVVPVPFK GADTKRISQE CQAVKTTLQG AGVRAIVDER DNYACGWKYA DWEMKGVPLR
401: IELGPRDLEK NQVRVVRRDT RVKMDVLRVD LVEKVKDLLE VIQRDLYDDA KRKLEESIQK VETWDEFKEA LRQKKLVLAP WCDEVEVEND VKENSKGENE
501: AGAKTLCTPF EQPELREDTL CFASGKPAKK WTYWGRSY

Best Arabidopsis Sequence Match ( AT3G62120.3 )
(BLAST)

001: MADPSEQKEK VVKEKVAKAS SSGQKKKDVK KETGLGLSVK KDENFGEWYS EVCKQDMIEY YDISGCYILR PWSMAIWEIM QIFFDAEIKK MKVKNCYFPL
101: FVSPGVLEKE KDHIEGFAPE VAWVTKSGKS DLEVPIAIRP TSETVMYPYY SKWIRGHRDL PLKLNQWCNV VRWEFSNPTP FIRSREFLWQ EGHTAFATKA
201: EADEEVLQIL ELYRRIYEEY LAVPVVKGMK SENEKFAGGL YTTSVEAFIP NTGRGVQGAT SHCLGQNFAK MFEINFENEK AETEMVWQNS WAYSTRTIGV
301: MIMTHGDDKG LVLPPKVASV QVVVIPVPYK DANTQGIYDA CTATASALCE AGIRAEEDLR DNYSPGWKYS DWEMKGVPLR IEIGPRDLEN DQVRTVRRDN
401: GVKEDIPRGS LVEHVKELLE KIQQNMYEVA KQKREACVQE VKTWDEFIKA LNEKKLILAP WCDEEEVERD VKARTKGETG AAKTLCSPFD QPELPEGTLC
501: FASGKPAKKW TYWGRSY

Arabidopsis Description

Proline--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.