Factsheet for PGSC0003DMT400073336

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g068320.2.1	Tomato	cytosol, extracellular, nucleus	99.22	99.22
PGSC0003DMT400036645	Potato	cytosol	89.32	91.45
KRG96602	Soybean	cytosol	83.5	83.5
KRH68339	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	83.3	83.3
Bra007663.1-P	Field mustard	cytosol	82.91	83.24
GSMUA_Achr3P28360_001	Banana	cytosol	18.84	82.91
CDX76618	Canola	cytosol	82.52	82.52
EES15248	Sorghum	cytosol	81.36	82.48
Zm00001d053196_P001	Maize	cytosol	81.36	82.48
VIT_07s0005g02620.t01	Wine grape	cytosol	81.94	81.78
EES19704	Sorghum	cytosol	80.58	81.69
Bra003487.1-P	Field mustard	cytosol	79.03	81.4
AT3G62120.1	Thale cress	cytosol	83.5	81.13
TraesCS3D01G415200.1	Wheat	cytosol, golgi	79.22	80.79
TraesCS1B01G342200.1	Wheat	cytosol, golgi	79.03	80.59
TraesCS3B01G455000.1	Wheat	cytosol, extracellular, golgi	79.03	80.59
TraesCS3A01G419600.1	Wheat	cytosol	78.83	80.4
Os12t0443700-01	Rice	cytosol	79.61	80.39
HORVU3Hr1G093050.2	Barley	cytosol	79.42	79.73
TraesCS1D01G210600.3	Wheat	cytosol	79.03	79.34
CDY25092	Canola	cytosol	82.72	78.89
CDX67878	Canola	cytosol	82.52	78.41
CDY11404	Canola	cytosol, mitochondrion, plastid, vacuole	82.72	76.21
GSMUA_Achr4P09390_001	Banana	cytosol	80.58	75.45
Zm00001d002585_P004	Maize	cytosol	76.31	75.14
HORVU4Hr1G079480.1	Barley	cytosol	5.05	74.29
Bra003486.1-P	Field mustard	cytosol	66.41	74.19
TraesCS7A01G200500.1	Wheat	cytosol	70.49	73.93
TraesCS7D01G203800.1	Wheat	cytosol	70.29	73.73
TraesCS7B01G107300.1	Wheat	cytosol	70.49	73.63
HORVU7Hr1G041110.1	Barley	cytosol	68.93	71.14
CDX67877	Canola	cytosol	59.22	69.79
KRH16405	Soybean	cytosol	17.48	67.16
CDY30248	Canola	cytosol	18.84	66.9
CDY25091	Canola	cytosol	56.5	66.59
Bra017510.1-P	Field mustard	cytosol	18.06	64.14
CDY30246	Canola	cytosol	19.81	62.58
Bra029197.1-P	Field mustard	cytosol	26.02	61.47
CDY05739	Canola	cytosol	13.59	58.82
Bra028248.1-P	Field mustard	cytosol	60.97	58.36
CDX94184	Canola	cytosol, endoplasmic reticulum	15.73	57.45
AT5G10880.1	Thale cress	cytosol	34.37	57.28
CDY33873	Canola	cytosol	13.2	56.2
Bra008444.1-P	Field mustard	cytosol	16.31	54.55
CDY67326	Canola	cytosol	15.73	54.36
CDX74456	Canola	cytosol	35.34	54.17
Bra037949.1-P	Field mustard	mitochondrion	15.15	53.06
CDY30241	Canola	cytosol	35.34	52.6
Bra037950.1-P	Field mustard	cytosol	12.23	52.5
KRH33484	Soybean	plastid	28.16	38.26
PGSC0003DMT400070798	Potato	plastid	40.0	37.66

Protein Annotations

KEGG:00970+6.1.1.15	EntrezGene:102603089	MapMan:17.2.17	Gene3D:3.30.110.30	Gene3D:3.30.930.10	Gene3D:3.40.50.800
InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812
GO:GO:0004827	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006433	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR006195	InterPro:IPR017449
InterPro:IPR036621	UniProt:M1CRV0	HAMAP:MF_01571	PFAM:PF00587	PFAM:PF03129	PFAM:PF09180
EnsemblPlantsGene:PGSC0003DMG400028502	PGSC:PGSC0003DMG400028502	EnsemblPlants:PGSC0003DMT400073336	PRINTS:PR01046	PFscan:PS50862	PANTHER:PTHR43382
PANTHER:PTHR43382:SF2	InterPro:Pro-tRNA-ligase_IIa	InterPro:Pro-tRNA-ligase_IIa_arc-type	InterPro:Pro-tRNA_ligase_II_C	InterPro:Pro-tRNA_synth_II	InterPro:ProRS_core_arch_euk
SMART:SM00946	SUPFAM:SSF52954	SUPFAM:SSF55681	SUPFAM:SSF64586	TIGRFAMs:TIGR00408	UniParc:UPI000296A5EA
RefSeq:XP_006356233.1	RefSeq:XP_006356234.1	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	SEG:seg	:

Description

Prolyl-tRNA synthetase [Source:PGSC_GENE;Acc:PGSC0003DMG400028502]

Coordinates

chr6:-:49898853..49905815

Molecular Weight (calculated)

58605.9 Da

IEP (calculated)

6.640

GRAVY (calculated)

-0.496

Length

515 amino acids

Sequence
(BLAST)

001: MAGKDADKGK KKEGKKEVVH GKKKEVKKET GLGLSYKKDE NFGEWYSEVV VSGEMIEYYD ISGCYILRPW AMSIWEILQT FFDAEIKKMK IKNSYFPLFV
101: SPAVLQKEKD HIEGFAPEVA WVTKSGDSDL EVPIAIRPTS ETVMYPYFSK WIRGHRDLPL RLNQWCNVVR WEFSNPTPFI RSREFLWQEG HTAFATKEEA
201: DEEVLDILEL YRRIYEEFLA VPVSKGKKSE LEKFAGGLYT TTVEAFIPNT GRGIQGATSH CLGQNFAKMF EINFENEKGE KAMVWQNSWA YTTRTIGVMI
301: MTHGDDKGLV LPPKVATTQV VVIPVPYKDA NTQGIYDACA ATVKSLNESG IRAEADFRDN YSPGWKYSHW EMKGVPLRIE IGPKDLANNQ VRAVRRDNGA
401: KTDIPVANLV EQVKDVLDSI QQNLFETAKQ KREACVQVVK TWDEFAEALG QKKLILAPWC DEEDVEKEVK TRTKGEMGAA KTLCSPFDQP ELPEGTLCFA
501: SGKPAKKWTY WGRSY

Best Arabidopsis Sequence Match ( AT3G62120.2 )
(BLAST)

001: MADPSEQKEK VVKEKKEKVK KEKVVKEKVA KASSSGQKKK DVKKETGLGL SVKKDENFGE WYSEVCKQDM IEYYDISGCY ILRPWSMAIW EIMQIFFDAE
101: IKKMKVKNCY FPLFVSPGVL EKEKDHIEGF APEVAWVTKS GKSDLEVPIA IRPTSETVMY PYYSKWIRGH RDLPLKLNQW CNVVRWEFSN PTPFIRSREF
201: LWQEGHTAFA TKAEADEEVL QILELYRRIY EEYLAVPVVK GMKSENEKFA GGLYTTSVEA FIPNTGRGVQ GATSHCLGQN FAKMFEINFE NEKAETEMVW
301: QNSWAYSTRT IGVMIMTHGD DKGLVLPPKV ASVQVVVIPV PYKDANTQGI YDACTATASA LCEAGIRAEE DLRDNYSPGW KYSDWEMKGV PLRIEIGPRD
401: LENDQVRTVR RDNGVKEDIP RGSLVEHVKE LLEKIQQNMY EVAKQKREAC VQEVKTWDEF IKALNEKKLI LAPWCDEEEV ERDVKARTKG ETGAAKTLCS
501: PFDQPELPEG TLCFASGKPA KKWTYWGRSY

Arabidopsis Description

Proline--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.