CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62120.1	CDY42827	AT2G42580.1	19000166
AT3G62120.1	CDY51514	AT2G42580.1	19000166
AT3G62120.1	CDY55390	AT2G42580.1	19000166
AT3G62120.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003487.1-P	Field mustard	cytosol	90.59	98.2
CDY25092	Canola	cytosol	95.2	95.56
CDX76618	Canola	cytosol	88.75	93.4
AT3G62120.1	Thale cress	cytosol	87.82	89.81
CDY11404	Canola	cytosol, mitochondrion, plastid, vacuole	90.04	87.3
GSMUA_Achr3P28360_001	Banana	cytosol	17.9	82.91
Solyc06g068320.2.1	Tomato	cytosol, extracellular, nucleus	78.41	82.52
PGSC0003DMT400073336	Potato	cytosol	78.41	82.52
KRH68339	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	78.23	82.33
KRG96602	Soybean	cytosol	78.23	82.33
PGSC0003DMT400036645	Potato	cytosol	75.83	81.71
Solyc03g117330.2.1	Tomato	cytosol	74.91	80.56
VIT_07s0005g02620.t01	Wine grape	cytosol	75.09	78.88
TraesCS3D01G415200.1	Wheat	cytosol, golgi	73.06	78.42
EES15248	Sorghum	cytosol	73.43	78.35
TraesCS3B01G455000.1	Wheat	cytosol, extracellular, golgi	72.88	78.22
TraesCS1B01G342200.1	Wheat	cytosol, golgi	72.88	78.22
TraesCS3A01G419600.1	Wheat	cytosol	72.69	78.02
Zm00001d053196_P001	Maize	cytosol	73.06	77.95
EES19704	Sorghum	cytosol	72.88	77.76
Os12t0443700-01	Rice	cytosol	72.51	77.06
HORVU3Hr1G093050.2	Barley	cytosol	72.88	77.0
TraesCS1D01G210600.3	Wheat	cytosol	72.51	76.61
GSMUA_Achr4P09390_001	Banana	cytosol	74.72	73.64
CDX67877	Canola	cytosol	58.12	72.08
Zm00001d002585_P004	Maize	cytosol	69.0	71.51
TraesCS7D01G203800.1	Wheat	cytosol	63.84	70.47
TraesCS7A01G200500.1	Wheat	cytosol	63.65	70.26
TraesCS7B01G107300.1	Wheat	cytosol	63.65	69.98
CDY25091	Canola	cytosol	55.9	69.34
CDY30248	Canola	cytosol	18.45	68.97
KRH16405	Soybean	cytosol	16.97	68.66
HORVU7Hr1G041110.1	Barley	cytosol	62.92	68.34
CDY30246	Canola	cytosol	19.37	64.42
HORVU4Hr1G079480.1	Barley	cytosol	4.06	62.86
CDY05739	Canola	cytosol	13.28	60.5
CDX94184	Canola	cytosol, endoplasmic reticulum	15.31	58.87
CDY33873	Canola	cytosol	12.73	57.02
CDY67326	Canola	cytosol	15.31	55.7
CDX74456	Canola	cytosol	34.13	55.06
CDY30241	Canola	cytosol	34.69	54.34
CDY27824	Canola	mitochondrion, plastid	37.64	38.13
CDX91656	Canola	plastid	35.06	37.48
KRH33484	Soybean	plastid	26.2	37.47
CDY27062	Canola	plastid	37.45	37.45
CDY00534	Canola	cytosol	25.83	35.44

Protein Annotations

KEGG:00970+6.1.1.15	MapMan:17.2.17	Gene3D:3.30.110.30	Gene3D:3.30.930.10	Gene3D:3.40.50.800	GO:A0A078BY71
InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	EnsemblPlants:CDX67878	ProteinID:CDX67878	ProteinID:CDX67878.1	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004827	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006412	GO:GO:0006418	GO:GO:0006433	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00099079001	InterPro:IPR006195	InterPro:IPR017449	InterPro:IPR036621
HAMAP:MF_01571	PFAM:PF00587	PFAM:PF03129	PFAM:PF09180	PRINTS:PR01046	PFscan:PS50862
PANTHER:PTHR43382	PANTHER:PTHR43382:SF2	InterPro:Pro-tRNA-ligase_IIa	InterPro:Pro-tRNA-ligase_IIa_arc-type	InterPro:Pro-tRNA_ligase_II_C	InterPro:Pro-tRNA_synth_II
InterPro:ProRS_core_arch_euk	SMART:SM00946	SUPFAM:SSF52954	SUPFAM:SSF55681	SUPFAM:SSF64586	TIGRFAMs:TIGR00408
UniParc:UPI0004EEB5B7	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	SEG:seg	:	:

Description

BnaA07g19180D

Coordinates

chrLK031787:-:2732386..2735538

Molecular Weight (calculated)

61984.9 Da

IEP (calculated)

6.636

GRAVY (calculated)

-0.581

Length

542 amino acids

Sequence
(BLAST)

001: MSPNTWRDIS GCSSVRKLAK SESKERVEMA GPSGKKEKVD KAGPSGGGKK KKDVKKETGL GLSVKKDENF GEWYSEVCKH EMIEYYDISG CYILRPWSMA
101: IWEIMQTFFD AEIKKMKVKN CYFPLFVSPG VLEKEKDHIE GFAPEVAWVT KSGKSDLEVP IAIRPTSETV MYPYYSKWIR GHRDLPLKLN QWCNVVRWEF
201: SNPTPFIRSR EFLWQEGHTA FATKEEADEE VLQILELYRR IYEEYLAVPV VKGMKSENEK FAGGLYTTSV EAFIPNTGRG VQGATSHCLG QNFAKMFEIR
301: YEDEEGKREM VWQNSWAYST RTLGVMIMTH GDDKGLILPP KVASVQVVVI PVPYKDANTQ GIFDACTATV SALSEAGIRA EEDLRDNYSP GWKYSNWEMK
401: GVPLRIEIGP RDLENDQVRT VRRDNGVKED IPRGSLVEHV KELLEKIQQN MYEVARQKRE ACVQEIRTWD EFISALNQKK LILAPWCDEE EVERDVKART
501: KGETGAAKTL CSPFEQPELP EGTLCFASGK PAKKWTYWGR SY

Best Arabidopsis Sequence Match ( AT3G62120.3 )
(BLAST)

001: MADPSEQKEK VVKEKVAKAS SSGQKKKDVK KETGLGLSVK KDENFGEWYS EVCKQDMIEY YDISGCYILR PWSMAIWEIM QIFFDAEIKK MKVKNCYFPL
101: FVSPGVLEKE KDHIEGFAPE VAWVTKSGKS DLEVPIAIRP TSETVMYPYY SKWIRGHRDL PLKLNQWCNV VRWEFSNPTP FIRSREFLWQ EGHTAFATKA
201: EADEEVLQIL ELYRRIYEEY LAVPVVKGMK SENEKFAGGL YTTSVEAFIP NTGRGVQGAT SHCLGQNFAK MFEINFENEK AETEMVWQNS WAYSTRTIGV
301: MIMTHGDDKG LVLPPKVASV QVVVIPVPYK DANTQGIYDA CTATASALCE AGIRAEEDLR DNYSPGWKYS DWEMKGVPLR IEIGPRDLEN DQVRTVRRDN
401: GVKEDIPRGS LVEHVKELLE KIQQNMYEVA KQKREACVQE VKTWDEFIKA LNEKKLILAP WCDEEEVERD VKARTKGETG AAKTLCSPFD QPELPEGTLC
501: FASGKPAKKW TYWGRSY

Arabidopsis Description

Proline--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.