CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62120.1	CDY42827	AT2G42580.1	19000166
AT3G62120.1	CDY51514	AT2G42580.1	19000166
AT3G62120.1	CDY55390	AT2G42580.1	19000166
AT3G62120.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003487.1-P	Field mustard	cytosol	91.11	98.4
CDX67878	Canola	cytosol	95.56	95.2
CDX76618	Canola	cytosol	89.26	93.59
AT3G62120.1	Thale cress	cytosol	88.33	90.0
CDY11404	Canola	cytosol, mitochondrion, plastid, vacuole	89.63	86.58
GSMUA_Achr3P28360_001	Banana	cytosol	17.96	82.91
Solyc06g068320.2.1	Tomato	cytosol, extracellular, nucleus	78.89	82.72
PGSC0003DMT400073336	Potato	cytosol	78.89	82.72
KRG96602	Soybean	cytosol	78.7	82.52
KRH68339	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	78.7	82.52
PGSC0003DMT400036645	Potato	cytosol	76.3	81.91
Solyc03g117330.2.1	Tomato	cytosol	75.37	80.75
VIT_07s0005g02620.t01	Wine grape	cytosol	75.56	79.07
TraesCS3D01G415200.1	Wheat	cytosol, golgi	73.52	78.61
EES15248	Sorghum	cytosol	73.89	78.54
TraesCS1B01G342200.1	Wheat	cytosol, golgi	73.33	78.42
TraesCS3B01G455000.1	Wheat	cytosol, extracellular, golgi	73.33	78.42
TraesCS3A01G419600.1	Wheat	cytosol	73.15	78.22
Zm00001d053196_P001	Maize	cytosol	73.52	78.15
EES19704	Sorghum	cytosol	73.33	77.95
Os12t0443700-01	Rice	cytosol	72.96	77.25
HORVU3Hr1G093050.2	Barley	cytosol	73.33	77.19
TraesCS1D01G210600.3	Wheat	cytosol	72.96	76.8
GSMUA_Achr4P09390_001	Banana	cytosol	74.63	73.27
CDX67877	Canola	cytosol	58.52	72.31
Zm00001d002585_P004	Maize	cytosol	69.26	71.51
TraesCS7D01G203800.1	Wheat	cytosol	64.26	70.67
TraesCS7A01G200500.1	Wheat	cytosol	64.07	70.47
TraesCS7B01G107300.1	Wheat	cytosol	64.07	70.18
CDY25091	Canola	cytosol	55.93	69.11
CDY30248	Canola	cytosol	18.52	68.97
KRH16405	Soybean	cytosol	17.04	68.66
HORVU7Hr1G041110.1	Barley	cytosol	63.33	68.54
CDY30246	Canola	cytosol	19.44	64.42
HORVU4Hr1G079480.1	Barley	cytosol	4.07	62.86
CDY05739	Canola	cytosol	13.52	61.34
CDX94184	Canola	cytosol, endoplasmic reticulum	15.56	59.57
CDY33873	Canola	cytosol	12.96	57.85
CDY67326	Canola	cytosol	15.56	56.38
CDX74456	Canola	cytosol	34.26	55.06
CDY30241	Canola	cytosol	34.63	54.05
CDY27824	Canola	mitochondrion, plastid	37.78	38.13
CDX91656	Canola	plastid	35.19	37.48
KRH33484	Soybean	plastid	26.3	37.47
CDY27062	Canola	plastid	37.59	37.45
CDY00534	Canola	cytosol	25.93	35.44

Protein Annotations

KEGG:00970+6.1.1.15	MapMan:17.2.17	Gene3D:3.30.110.30	Gene3D:3.30.930.10	Gene3D:3.40.50.800	GO:A0A078GIU2
UniProt:A0A078GIU2	InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	EnsemblPlants:CDY25092	ProteinID:CDY25092	ProteinID:CDY25092.1
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004827
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006433	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00028951001	InterPro:IPR006195	InterPro:IPR017449
InterPro:IPR036621	HAMAP:MF_01571	PFAM:PF00587	PFAM:PF03129	PFAM:PF09180	PRINTS:PR01046
PFscan:PS50862	PANTHER:PTHR43382	PANTHER:PTHR43382:SF2	InterPro:Pro-tRNA-ligase_IIa	InterPro:Pro-tRNA-ligase_IIa_arc-type	InterPro:Pro-tRNA_ligase_II_C
InterPro:Pro-tRNA_synth_II	InterPro:ProRS_core_arch_euk	SMART:SM00946	SUPFAM:SSF52954	SUPFAM:SSF55681	SUPFAM:SSF64586
TIGRFAMs:TIGR00408	UniParc:UPI0004EB296F	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	SEG:seg	:

Description

BnaC06g18340DBnaC06g18340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GIU2]

Coordinates

chrLK032168:-:379110..382496

Molecular Weight (calculated)

61807.8 Da

IEP (calculated)

7.099

GRAVY (calculated)

-0.580

Length

540 amino acids

Sequence
(BLAST)

001: MRPNTWRDIS GCSSVRKLAK KEERVGMAGP SGKKEKVDKA GPSGGGKKKK DVKKETGLGL SVKKDENFGE WYSEVCKHEM IEYYDISGCY ILRPWSMAIW
101: EIMQTFFDAE IKKMKVKNCY FPLFVSPGVL EKEKDHIEGF APEVAWVTKS GKSDLEVPIA IRPTSETVMY PYYSKWIRGH RDLPLKLNQW CNVVRWEFSN
201: PTPFIRSREF LWQEGHTAFA TKEEADEEVL QILELYRRIY EEYLAVPVVK GMKSENEKFA GGLYTTSVEA FIPNTGRGVQ GATSHCLGQN FAKMFEIRYE
301: DEEGKREMVW QNSWAYSTRT IGVMIMTHGD DKGLILPPKV ASVQVVVIPV PYKDANTQGI FDACTATVSA LSEAGIRAEE DLRDNYSPGW KYSNWEMKGV
401: PLRIEIGPRD LENDQVRTVR RDNGVKEDIP RGSLVEHVKE LLEKIQQNMY EVARQKREAC VQEIRTWDEF ISALNQKKLI LAPWCDEEEV ERDVKARTKG
501: ETGAAKTLCS PFEQPELPEG TLCFASGKPA KKWTYWGRSY

Best Arabidopsis Sequence Match ( AT3G62120.3 )
(BLAST)

001: MADPSEQKEK VVKEKVAKAS SSGQKKKDVK KETGLGLSVK KDENFGEWYS EVCKQDMIEY YDISGCYILR PWSMAIWEIM QIFFDAEIKK MKVKNCYFPL
101: FVSPGVLEKE KDHIEGFAPE VAWVTKSGKS DLEVPIAIRP TSETVMYPYY SKWIRGHRDL PLKLNQWCNV VRWEFSNPTP FIRSREFLWQ EGHTAFATKA
201: EADEEVLQIL ELYRRIYEEY LAVPVVKGMK SENEKFAGGL YTTSVEAFIP NTGRGVQGAT SHCLGQNFAK MFEINFENEK AETEMVWQNS WAYSTRTIGV
301: MIMTHGDDKG LVLPPKVASV QVVVIPVPYK DANTQGIYDA CTATASALCE AGIRAEEDLR DNYSPGWKYS DWEMKGVPLR IEIGPRDLEN DQVRTVRRDN
401: GVKEDIPRGS LVEHVKELLE KIQQNMYEVA KQKREACVQE VKTWDEFIKA LNEKKLILAP WCDEEEVERD VKARTKGETG AAKTLCSPFD QPELPEGTLC
501: FASGKPAKKW TYWGRSY

Arabidopsis Description

Proline--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.