CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74456	Canola	cytosol	93.79	40.48
CDY30241	Canola	cytosol	93.79	39.31
AT5G10880.1	Thale cress	cytosol	71.03	33.33
CDX67877	Canola	cytosol	70.34	23.34
CDY25091	Canola	cytosol	68.97	22.88
CDX76618	Canola	cytosol	68.97	19.42
PGSC0003DMT400036645	Potato	cytosol	66.21	19.09
Solyc03g117330.2.1	Tomato	cytosol	66.21	19.05
PGSC0003DMT400073336	Potato	cytosol	66.9	18.84
KRG96602	Soybean	cytosol	66.21	18.64
CDY25092	Canola	cytosol	68.97	18.52
CDX67878	Canola	cytosol	68.97	18.45
Solyc06g068320.2.1	Tomato	cytosol, extracellular, nucleus	65.52	18.45
KRH68339	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	65.52	18.45
TraesCS7A01G200500.1	Wheat	cytosol	62.07	18.33
TraesCS3D01G415200.1	Wheat	cytosol, golgi	63.45	18.22
TraesCS3B01G455000.1	Wheat	cytosol, extracellular, golgi	63.45	18.22
TraesCS3A01G419600.1	Wheat	cytosol	63.45	18.22
HORVU3Hr1G093050.2	Barley	cytosol	64.14	18.13
TraesCS1B01G342200.1	Wheat	cytosol, golgi	62.76	18.02
Zm00001d053196_P001	Maize	cytosol	62.76	17.91
EES15248	Sorghum	cytosol	62.76	17.91
CDY11404	Canola	cytosol, mitochondrion, plastid, vacuole	68.97	17.89
TraesCS7B01G107300.1	Wheat	cytosol	60.69	17.85
Os12t0443700-01	Rice	cytosol	62.76	17.84
VIT_07s0005g02620.t01	Wine grape	cytosol	63.45	17.83
TraesCS1D01G210600.3	Wheat	cytosol	62.76	17.74
TraesCS7D01G203800.1	Wheat	cytosol	60.0	17.72
EES19704	Sorghum	cytosol	62.07	17.72
GSMUA_Achr4P09390_001	Banana	cytosol	66.9	17.64
HORVU7Hr1G041110.1	Barley	cytosol	60.69	17.64
Zm00001d002585_P004	Maize	cytosol	62.07	17.21
CDY00534	Canola	cytosol	26.9	9.87
CDY27062	Canola	plastid	35.86	9.59
CDY27824	Canola	mitochondrion, plastid	35.17	9.53
CDX91656	Canola	plastid	27.59	7.89
CDY33873	Canola	cytosol	3.45	4.13
CDX94184	Canola	cytosol, endoplasmic reticulum	3.45	3.55
CDY05739	Canola	cytosol	2.76	3.36
CDY67326	Canola	cytosol	3.45	3.36
KRH33484	Soybean	plastid	7.59	2.9
KRH16405	Soybean	cytosol	0.69	0.75
CDY30246	Canola	cytosol	0.0	0.0
HORVU4Hr1G079480.1	Barley	cytosol	0.0	0.0
GSMUA_Achr3P28360_001	Banana	cytosol	0.0	0.0

Protein Annotations

KEGG:00970+6.1.1.15	Gene3D:3.30.110.30	Gene3D:3.40.50.800	MapMan:35.1	GO:A0A078H084	UniProt:A0A078H084
InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	EnsemblPlants:CDY30248	ProteinID:CDY30248	ProteinID:CDY30248.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004827	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006433
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00044882001
InterPro:IPR017449	InterPro:IPR036621	PFAM:PF03129	PFAM:PF09180	PANTHER:PTHR43382	PANTHER:PTHR43382:SF2
InterPro:Pro-tRNA_ligase_II_C	InterPro:Pro-tRNA_synth_II	SMART:SM00946	SUPFAM:SSF52954	SUPFAM:SSF64586	UniParc:UPI0004EE3D60
SEG:seg	:	:	:	:	:

Description

BnaC04g31590DBnaC04g31590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H084]

Coordinates

chrLK032251:+:40415..40852

Molecular Weight (calculated)

16927.4 Da

IEP (calculated)

5.485

GRAVY (calculated)

-0.690

Length

145 amino acids

Sequence
(BLAST)

001: MKGVPLRIEL GPRDLEKNQV RMVRRDTGAK MDVLRVDLVE KVKELLEVIQ RDLYDVAKRK LEECIQKVET WDEFKEALRL KKLVLAPWCD EVEVENDVKE
101: NTKGENEAGA KTLCTPFDQP ELREDTLCFA SGKPAKKWTY WGRSY

Best Arabidopsis Sequence Match ( AT3G62120.1 )
(BLAST)

001: MADPSEQKEK VVKEKKEKVK KEKVVKEKVA KASSSGQKKK DVKKETGLGL SVKKDENFGE WYSEVCKQDM IEYYDISGCY ILRPWSMAIW EIMQIFFDAE
101: IKKMKVKNCY FPLFVSPGVL EKEKDHIEGF APEVAWVTKS GKSDLEVPIA IRPTSETVMY PYYSKWIRGH RDLPLKLNQW CNVVRWEFSN PTPFIRSREF
201: LWQEGHTAFA TKAEADEEVL QILELYRRIY EEYLAVPVVK GMKSENEKFA GGLYTTSVEA FIPNTGRGVQ GATSHCLGQN FAKMFEINFE NEKAETEMVW
301: QNSWAYSTRT IGVMIMTHGD DKGLVLPPKV ASVQVVVIPV PYKDANTQGI YDACTATASA LCEAGIRAEE DLRDNYSPGW KYSDWEMKGV PLRIEIGPRD
401: LENDQVRTVR RDNGVKEDIP RGSLVEHVKE LLEKIQQNMY EVAKQKREAC VQEVKTWDEF IKALNEKKLI LAPWCDEEEV ERDVKARTKG ETGAAKTLCS
501: PFDQPELPEG TLCFASGKPA KKWTYWGRSY

Arabidopsis Description

Proline--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.