Factsheet for GSMUA_Achr3P28360_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P25160_001
GSMUA_Achr4P08560_001
GSMUA_Achr7P24480_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62120.1	GSMUA_Achr10P...	AT2G42580.1	19000166
AT3G62120.1	GSMUA_Achr3P25160_001	AT2G42580.1	19000166
AT3G62120.1	GSMUA_Achr4P08560_001	AT2G42580.1	19000166
AT3G62120.1	GSMUA_Achr7P24480_001	AT2G42580.1	19000166
AT3G62120.1	GSMUA_AchrUn_...	AT2G42580.1	19000166
AT3G62120.1	GSMUA_AchrUn_...	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G079480.1	Barley	cytosol	16.24	54.29
KRH16405	Soybean	cytosol	41.88	36.57
CDY30246	Canola	cytosol	41.88	30.06
Bra003487.1-P	Field mustard	cytosol	82.91	19.4
Solyc03g117330.2.1	Tomato	cytosol	82.05	19.05
VIT_07s0005g02620.t01	Wine grape	cytosol	83.76	18.99
Bra007663.1-P	Field mustard	cytosol	82.91	18.91
PGSC0003DMT400036645	Potato	cytosol	81.2	18.89
PGSC0003DMT400073336	Potato	cytosol	82.91	18.84
Solyc06g068320.2.1	Tomato	cytosol, extracellular, nucleus	82.91	18.84
GSMUA_Achr4P09390_001	Banana	cytosol	88.03	18.73
CDX76618	Canola	cytosol	82.05	18.64
KRG96602	Soybean	cytosol	80.34	18.25
KRH68339	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	80.34	18.25
TraesCS1B01G342200.1	Wheat	cytosol, golgi	78.63	18.22
TraesCS3D01G415200.1	Wheat	cytosol, golgi	78.63	18.22
AT3G62120.1	Thale cress	cytosol	82.05	18.11
EES19704	Sorghum	cytosol	78.63	18.11
EES15248	Sorghum	cytosol	78.63	18.11
TraesCS3A01G419600.1	Wheat	cytosol	77.78	18.02
TraesCS3B01G455000.1	Wheat	cytosol, extracellular, golgi	77.78	18.02
CDY25092	Canola	cytosol	82.91	17.96
TraesCS1D01G210600.3	Wheat	cytosol	78.63	17.93
HORVU3Hr1G093050.2	Barley	cytosol	78.63	17.93
Zm00001d053196_P001	Maize	cytosol	77.78	17.91
CDX67878	Canola	cytosol	82.91	17.9
Os12t0443700-01	Rice	cytosol	77.78	17.84
Bra003486.1-P	Field mustard	cytosol	69.23	17.57
CDY11404	Canola	cytosol, mitochondrion, plastid, vacuole	82.91	17.35
Zm00001d002585_P004	Maize	cytosol	76.92	17.21
TraesCS7D01G203800.1	Wheat	cytosol	70.09	16.7
TraesCS7A01G200500.1	Wheat	cytosol	70.09	16.7
TraesCS7B01G107300.1	Wheat	cytosol	69.23	16.43
HORVU7Hr1G041110.1	Barley	cytosol	68.38	16.03
CDX67877	Canola	cytosol	44.44	11.9
KRH33484	Soybean	plastid	37.61	11.61
CDY25091	Canola	cytosol	42.73	11.44
Bra028248.1-P	Field mustard	cytosol	51.28	11.15
GSMUA_Achr5P23600_001	Banana	cytosol	41.88	10.94
CDY30241	Canola	cytosol	20.51	6.94
CDX74456	Canola	cytosol	12.82	4.46
AT5G10880.1	Thale cress	cytosol	8.55	3.24
CDY05739	Canola	cytosol	2.56	2.52
CDX94184	Canola	cytosol, endoplasmic reticulum	2.56	2.13
CDY67326	Canola	cytosol	1.71	1.34
Bra008444.1-P	Field mustard	cytosol	1.71	1.3
Bra037950.1-P	Field mustard	cytosol	0.0	0.0
Bra037949.1-P	Field mustard	mitochondrion	0.0	0.0
Bra029197.1-P	Field mustard	cytosol	0.0	0.0
Bra017510.1-P	Field mustard	cytosol	0.0	0.0
GSMUA_Achr7P07780_001	Banana	cytosol	0.0	0.0
GSMUA_Achr7P07770_001	Banana	cytosol	0.0	0.0
CDY30248	Canola	cytosol	0.0	0.0
CDY33873	Canola	cytosol	0.0	0.0

Protein Annotations

KEGG:00970+6.1.1.15	MapMan:17.2.17	Gene3D:3.30.930.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004827	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006433	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr3G28360_001	EnsemblPlants:GSMUA_Achr3P28360_001	EnsemblPlants:GSMUA_Achr3T28360_001
UniProt:M0SIK2	PRINTS:PR01046	PANTHER:PTHR43382	PANTHER:PTHR43382:SF2	InterPro:Pro-tRNA-ligase_IIa	SUPFAM:SSF55681
UniParc:UPI0002950D3D	:	:	:	:	:

Description

Putative prolyl-tRNA synthetase C19C7.06 [Source:GMGC_GENE;Acc:GSMUA_Achr3G28360_001]

Coordinates

chr3:-:27643173..27645974

Molecular Weight (calculated)

13820.8 Da

IEP (calculated)

8.682

GRAVY (calculated)

-0.226

Length

117 amino acids

Sequence
(BLAST)

001: MIEFYGISGC YILRPWTMAI WETLQTFFDA KIKKMNIKNA YFPLFVTKNV LEKEKDHIEG FAPEVAWVTQ SGQSELEVPI AIRPTSETVT YPYFSKWTKG
101: HRDLPLKLNQ WCNIVRW

Best Arabidopsis Sequence Match ( AT3G62120.2 )
(BLAST)

001: MADPSEQKEK VVKEKKEKVK KEKVVKEKVA KASSSGQKKK DVKKETGLGL SVKKDENFGE WYSEVCKQDM IEYYDISGCY ILRPWSMAIW EIMQIFFDAE
101: IKKMKVKNCY FPLFVSPGVL EKEKDHIEGF APEVAWVTKS GKSDLEVPIA IRPTSETVMY PYYSKWIRGH RDLPLKLNQW CNVVRWEFSN PTPFIRSREF
201: LWQEGHTAFA TKAEADEEVL QILELYRRIY EEYLAVPVVK GMKSENEKFA GGLYTTSVEA FIPNTGRGVQ GATSHCLGQN FAKMFEINFE NEKAETEMVW
301: QNSWAYSTRT IGVMIMTHGD DKGLVLPPKV ASVQVVVIPV PYKDANTQGI YDACTATASA LCEAGIRAEE DLRDNYSPGW KYSDWEMKGV PLRIEIGPRD
401: LENDQVRTVR RDNGVKEDIP RGSLVEHVKE LLEKIQQNMY EVAKQKREAC VQEVKTWDEF IKALNEKKLI LAPWCDEEEV ERDVKARTKG ETGAAKTLCS
501: PFDQPELPEG TLCFASGKPA KKWTYWGRSY

Arabidopsis Description

Proline--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.