Factsheet for Bra008444.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
extracellular 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037950.1-P	Field mustard	cytosol	71.43	91.67
Bra037949.1-P	Field mustard	mitochondrion	81.17	85.03
Bra003486.1-P	Field mustard	cytosol	63.64	21.26
KRH16405	Soybean	cytosol	18.18	20.9
Bra007663.1-P	Field mustard	cytosol	58.44	17.54
Bra003487.1-P	Field mustard	cytosol	56.49	17.4
TraesCS3D01G415200.1	Wheat	cytosol, golgi	56.49	17.23
TraesCS3B01G455000.1	Wheat	cytosol, extracellular, golgi	56.49	17.23
TraesCS3A01G419600.1	Wheat	cytosol	56.49	17.23
TraesCS1B01G342200.1	Wheat	cytosol, golgi	55.84	17.03
Zm00001d053196_P001	Maize	cytosol	55.84	16.93
EES15248	Sorghum	cytosol	55.84	16.93
EES19704	Sorghum	cytosol	55.84	16.93
TraesCS7D01G203800.1	Wheat	cytosol	53.9	16.9
HORVU3Hr1G093050.2	Barley	cytosol	55.84	16.76
TraesCS1D01G210600.3	Wheat	cytosol	55.84	16.76
TraesCS7B01G107300.1	Wheat	cytosol	53.25	16.63
KRG96602	Soybean	cytosol	55.19	16.5
KRH68339	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	55.19	16.5
TraesCS7A01G200500.1	Wheat	cytosol	52.6	16.5
HORVU7Hr1G041110.1	Barley	cytosol	53.25	16.43
PGSC0003DMT400073336	Potato	cytosol	54.55	16.31
Solyc06g068320.2.1	Tomato	cytosol, extracellular, nucleus	54.55	16.31
PGSC0003DMT400036645	Potato	cytosol	53.25	16.3
VIT_07s0005g02620.t01	Wine grape	cytosol	53.9	16.09
Os12t0443700-01	Rice	cytosol	53.25	16.08
Solyc03g117330.2.1	Tomato	cytosol	51.95	15.87
GSMUA_Achr4P09390_001	Banana	cytosol	54.55	15.27
Bra028313.1-P	Field mustard	cytosol	35.71	13.48
Zm00001d002585_P004	Maize	cytosol	45.45	13.38
Bra028248.1-P	Field mustard	cytosol	46.1	13.2
Bra022597.1-P	Field mustard	plastid	38.31	10.89
KRH33484	Soybean	plastid	25.97	10.55
Bra029197.1-P	Field mustard	cytosol	11.69	8.26
Bra017510.1-P	Field mustard	cytosol	3.25	3.45
HORVU4Hr1G079480.1	Barley	cytosol	0.65	2.86
GSMUA_Achr3P28360_001	Banana	cytosol	1.3	1.71

Protein Annotations

EnsemblPlants:Bra008444.1	EnsemblPlants:Bra008444.1-P	EnsemblPlantsGene:Bra008444	Gene3D:3.30.930.10	PANTHER:PTHR43382	SUPFAM:SSF55681
UniParc:UPI0002546A6D	UniProt:M4CW47	MapMan:35.1	:	:	:

Description

AT3G62120 (E=3e-019) | tRNA synthetase class II (G, H, P and S) family protein

Coordinates

chrA02:+:15670974..15671991

Molecular Weight (calculated)

17500.1 Da

IEP (calculated)

8.458

GRAVY (calculated)

-0.230

Length

154 amino acids

Sequence
(BLAST)

001: MVEGSWKIIV LHRCFVRWSR EFLWQGHTVH ATKEDADKEV LEALDHYRHI YEEYFAVPVV KGMKSEKKFA GARYTTSVEK LVVVYKVQRC LTSHSQIKKE
101: KVKGVANSWA YSAITIGVMI LTYGDDKGLV NPPNVAPIQV RLSEEGNGLD VCDS

Best Arabidopsis Sequence Match ( AT3G62120.1 )
(BLAST)

001: MADPSEQKEK VVKEKKEKVK KEKVVKEKVA KASSSGQKKK DVKKETGLGL SVKKDENFGE WYSEVCKQDM IEYYDISGCY ILRPWSMAIW EIMQIFFDAE
101: IKKMKVKNCY FPLFVSPGVL EKEKDHIEGF APEVAWVTKS GKSDLEVPIA IRPTSETVMY PYYSKWIRGH RDLPLKLNQW CNVVRWEFSN PTPFIRSREF
201: LWQEGHTAFA TKAEADEEVL QILELYRRIY EEYLAVPVVK GMKSENEKFA GGLYTTSVEA FIPNTGRGVQ GATSHCLGQN FAKMFEINFE NEKAETEMVW
301: QNSWAYSTRT IGVMIMTHGD DKGLVLPPKV ASVQVVVIPV PYKDANTQGI YDACTATASA LCEAGIRAEE DLRDNYSPGW KYSDWEMKGV PLRIEIGPRD
401: LENDQVRTVR RDNGVKEDIP RGSLVEHVKE LLEKIQQNMY EVAKQKREAC VQEVKTWDEF IKALNEKKLI LAPWCDEEEV ERDVKARTKG ETGAAKTLCS
501: PFDQPELPEG TLCFASGKPA KKWTYWGRSY

Arabidopsis Description

Proline--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.