Factsheet for Solyc03g117330.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036645	Potato	cytosol	95.24	95.43
Solyc06g068320.2.1	Tomato	cytosol, extracellular, nucleus	90.28	88.35
GSMUA_Achr3P28360_001	Banana	cytosol	19.05	82.05
KRG96602	Soybean	cytosol	83.53	81.75
KRH68339	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	83.33	81.55
Bra007663.1-P	Field mustard	cytosol	81.94	80.51
VIT_07s0005g02620.t01	Wine grape	cytosol	81.94	80.04
CDX76618	Canola	cytosol	81.55	79.81
EES15248	Sorghum	cytosol	78.57	77.95
AT3G62120.1	Thale cress	cytosol	81.75	77.74
Bra003487.1-P	Field mustard	cytosol	76.98	77.6
Zm00001d053196_P001	Maize	cytosol	78.17	77.56
TraesCS3B01G455000.1	Wheat	cytosol, extracellular, golgi	77.58	77.43
TraesCS3D01G415200.1	Wheat	cytosol, golgi	77.58	77.43
EES19704	Sorghum	cytosol	77.98	77.36
TraesCS3A01G419600.1	Wheat	cytosol	77.38	77.23
TraesCS1B01G342200.1	Wheat	cytosol, golgi	77.18	77.03
Os12t0443700-01	Rice	cytosol	76.98	76.08
HORVU3Hr1G093050.2	Barley	cytosol	77.38	76.02
TraesCS1D01G210600.3	Wheat	cytosol	77.38	76.02
CDY25092	Canola	cytosol	80.75	75.37
CDX67878	Canola	cytosol	80.56	74.91
GSMUA_Achr4P09390_001	Banana	cytosol	80.75	74.0
CDY11404	Canola	cytosol, mitochondrion, plastid, vacuole	81.55	73.52
Zm00001d002585_P004	Maize	cytosol	74.21	71.51
HORVU4Hr1G079480.1	Barley	cytosol	4.96	71.43
Bra003486.1-P	Field mustard	cytosol	65.28	71.37
TraesCS7A01G200500.1	Wheat	cytosol	69.44	71.28
TraesCS7B01G107300.1	Wheat	cytosol	69.25	70.79
TraesCS7D01G203800.1	Wheat	cytosol	68.85	70.67
HORVU7Hr1G041110.1	Barley	cytosol	68.06	68.74
KRH16405	Soybean	cytosol	18.06	67.91
CDX67877	Canola	cytosol	57.94	66.82
CDY30248	Canola	cytosol	19.05	66.21
CDY25091	Canola	cytosol	55.36	63.84
Bra017510.1-P	Field mustard	cytosol	18.25	63.45
CDY30246	Canola	cytosol	19.84	61.35
Bra029197.1-P	Field mustard	cytosol	25.6	59.17
Bra028248.1-P	Field mustard	cytosol	60.52	56.69
CDY05739	Canola	cytosol	13.29	56.3
AT5G10880.1	Thale cress	cytosol	34.13	55.66
CDX94184	Canola	cytosol, endoplasmic reticulum	15.28	54.61
CDY33873	Canola	cytosol	12.9	53.72
Bra008444.1-P	Field mustard	cytosol	15.87	51.95
CDX74456	Canola	cytosol	34.52	51.79
CDY67326	Canola	cytosol	15.28	51.68
CDY30241	Canola	cytosol	34.92	50.87
Bra037950.1-P	Field mustard	cytosol	12.1	50.83
Bra037949.1-P	Field mustard	mitochondrion	14.68	50.34
KRH33484	Soybean	plastid	28.37	37.73
Solyc01g096870.2.1	Tomato	plastid	38.89	35.83

Protein Annotations

KEGG:00970+6.1.1.15	MapMan:17.2.17	Gene3D:3.30.110.30	Gene3D:3.30.930.10	Gene3D:3.40.50.800	InterPro:Anticodon-bd
InterPro:Anticodon-bd_dom_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004827
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006433	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0017101	GO:GO:0019538	InterPro:IPR006195	InterPro:IPR017449
InterPro:IPR036621	UniProt:K4BLN5	HAMAP:MF_01571	PFAM:PF00587	PFAM:PF03129	PFAM:PF09180
PRINTS:PR01046	PFscan:PS50862	PANTHER:PTHR43382	PANTHER:PTHR43382:SF2	InterPro:Pro-tRNA-ligase_IIa	InterPro:Pro-tRNA-ligase_IIa_arc-type
InterPro:Pro-tRNA_ligase_II_C	InterPro:Pro-tRNA_synth_II	InterPro:ProRS_core_arch_euk	SMART:SM00946	SUPFAM:SSF52954	SUPFAM:SSF55681
SUPFAM:SSF64586	EnsemblPlantsGene:Solyc03g117330.2	EnsemblPlants:Solyc03g117330.2.1	TIGRFAMs:TIGR00408	UniParc:UPI000276769C	InterPro:aa-tRNA-synt_IIb
InterPro:aa-tRNA-synth_II	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:66485273..66490165

Molecular Weight (calculated)

57636.9 Da

IEP (calculated)

6.638

GRAVY (calculated)

-0.454

Length

504 amino acids

Sequence
(BLAST)

001: MFGKDPKKRE KMKEVKKETG LGLSYKKDEN FGEWYSEVVV SGEMIEYYDI SGCYILRPWS MSIWEILQGF FNAEIKKMKI KNSYFPLFVS PAVLQKEKDH
101: IEGFAPEVAW VTKSGDSDLE VPIAIRPTSE TVMYPYFSKW IRGHRDLPLR LNQWCNIVRW EFSNPTPFIR SREFLWQEGH TAFARKEESD AEVLEILELY
201: RRIYEDLLAV PVSKGKKSEL EKFAGGLYTT TVEAFIPNTG RGIQGATSHC LGQNFARIFE INFENEKGEK AMVWQNSWGF STRTIGVMIM VHGDDKGLVL
301: PPKVASTQVV VIPVTYKDAN TQGIYDACAA TVREMNESGI RAEADFRENY SPGWKYSHWE MKGVPLRIEI GPKDLANNQV RAVRRDNGDK TDIPMANLAE
401: QVKDMLATIQ QNLFDVAKQK RDACIQIVRT WDEFTVALGQ KKLILAPWCD EEDVEKDVKA RTKGEMGAAK TLCSPFDQPE LPEGTLCFAS GKPAKKWTYW
501: GHSY

Best Arabidopsis Sequence Match ( AT3G62120.2 )
(BLAST)

001: MADPSEQKEK VVKEKKEKVK KEKVVKEKVA KASSSGQKKK DVKKETGLGL SVKKDENFGE WYSEVCKQDM IEYYDISGCY ILRPWSMAIW EIMQIFFDAE
101: IKKMKVKNCY FPLFVSPGVL EKEKDHIEGF APEVAWVTKS GKSDLEVPIA IRPTSETVMY PYYSKWIRGH RDLPLKLNQW CNVVRWEFSN PTPFIRSREF
201: LWQEGHTAFA TKAEADEEVL QILELYRRIY EEYLAVPVVK GMKSENEKFA GGLYTTSVEA FIPNTGRGVQ GATSHCLGQN FAKMFEINFE NEKAETEMVW
301: QNSWAYSTRT IGVMIMTHGD DKGLVLPPKV ASVQVVVIPV PYKDANTQGI YDACTATASA LCEAGIRAEE DLRDNYSPGW KYSDWEMKGV PLRIEIGPRD
401: LENDQVRTVR RDNGVKEDIP RGSLVEHVKE LLEKIQQNMY EVAKQKREAC VQEVKTWDEF IKALNEKKLI LAPWCDEEEV ERDVKARTKG ETGAAKTLCS
501: PFDQPELPEG TLCFASGKPA KKWTYWGRSY

Arabidopsis Description

Proline--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.