CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01073
EES02247
OQU78515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62120.1	EES01073	AT2G42580.1	19000166
AT3G62120.1	EES02247	AT2G42580.1	19000166
AT3G62120.1	OQU78515	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15248	Sorghum	cytosol	97.64	97.64
Zm00001d053196_P001	Maize	cytosol	96.65	96.65
TraesCS1B01G342200.1	Wheat	cytosol, golgi	90.94	91.49
TraesCS3A01G419600.1	Wheat	cytosol	90.16	90.69
TraesCS3D01G415200.1	Wheat	cytosol, golgi	89.96	90.5
TraesCS3B01G455000.1	Wheat	cytosol, extracellular, golgi	89.96	90.5
HORVU3Hr1G093050.2	Barley	cytosol	90.94	90.06
TraesCS1D01G210600.3	Wheat	cytosol	90.55	89.67
Os12t0443700-01	Rice	cytosol	89.37	89.02
TraesCS7A01G200500.1	Wheat	cytosol	79.72	82.48
TraesCS7B01G107300.1	Wheat	cytosol	79.92	82.35
TraesCS7D01G203800.1	Wheat	cytosol	78.94	81.67
PGSC0003DMT400073336	Potato	cytosol	81.69	80.58
Solyc06g068320.2.1	Tomato	cytosol, extracellular, nucleus	81.5	80.39
HORVU7Hr1G041110.1	Barley	cytosol	78.94	80.36
PGSC0003DMT400036645	Potato	cytosol	78.15	78.93
KRH68339	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	79.72	78.64
GSMUA_Achr3P28360_001	Banana	cytosol	18.11	78.63
KRG96602	Soybean	cytosol	79.53	78.45
Solyc03g117330.2.1	Tomato	cytosol	77.36	77.98
VIT_07s0005g02620.t01	Wine grape	cytosol	78.54	77.33
CDX76618	Canola	cytosol	78.15	77.09
Bra007663.1-P	Field mustard	cytosol	77.76	77.0
Bra003487.1-P	Field mustard	cytosol	74.61	75.8
AT3G62120.1	Thale cress	cytosol	77.36	74.15
GSMUA_Achr4P09390_001	Banana	cytosol	79.53	73.45
CDY25092	Canola	cytosol	77.95	73.33
CDX67878	Canola	cytosol	77.76	72.88
Bra003486.1-P	Field mustard	cytosol	64.37	70.93
CDY11404	Canola	cytosol, mitochondrion, plastid, vacuole	77.95	70.84
CDX67877	Canola	cytosol	57.28	66.59
CDY25091	Canola	cytosol	54.92	63.84
CDY30246	Canola	cytosol	20.47	63.8
CDY05739	Canola	cytosol	14.76	63.03
CDY30248	Canola	cytosol	17.72	62.07
KRH16405	Soybean	cytosol	16.34	61.94
Bra017510.1-P	Field mustard	cytosol	17.13	60.0
Bra029197.1-P	Field mustard	cytosol	25.0	58.26
CDX94184	Canola	cytosol, endoplasmic reticulum	16.14	58.16
CDY33873	Canola	cytosol	13.78	57.85
Bra028248.1-P	Field mustard	cytosol	60.24	56.88
Bra008444.1-P	Field mustard	cytosol	16.93	55.84
Bra037949.1-P	Field mustard	mitochondrion	16.14	55.78
CDY67326	Canola	cytosol	16.34	55.7
Bra037950.1-P	Field mustard	cytosol	12.8	54.17
AT5G10880.1	Thale cress	cytosol	32.28	53.07
CDX74456	Canola	cytosol	34.45	52.08
CDY30241	Canola	cytosol	35.04	51.45
EER95900	Sorghum	mitochondrion	40.55	38.87
KRH33484	Soybean	plastid	27.17	36.41

Protein Annotations

KEGG:00970+6.1.1.15	MapMan:17.2.17	Gene3D:3.30.110.30	Gene3D:3.30.930.10	Gene3D:3.40.50.800	EntrezGene:8064145
InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	UniProt:C5YZU3	EnsemblPlants:EES19704	ProteinID:EES19704	ProteinID:EES19704.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004827	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006412	GO:GO:0006418	GO:GO:0006433	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0017101	GO:GO:0019538	InterPro:IPR006195	InterPro:IPR017449	InterPro:IPR036621
HAMAP:MF_01571	PFAM:PF00587	PFAM:PF03129	PFAM:PF09180	PRINTS:PR01046	PFscan:PS50862
PANTHER:PTHR43382	PANTHER:PTHR43382:SF2	InterPro:Pro-tRNA-ligase_IIa	InterPro:Pro-tRNA-ligase_IIa_arc-type	InterPro:Pro-tRNA_ligase_II_C	InterPro:Pro-tRNA_synth_II
InterPro:ProRS_core_arch_euk	SMART:SM00946	EnsemblPlantsGene:SORBI_3009G175300	SUPFAM:SSF52954	SUPFAM:SSF55681	SUPFAM:SSF64586
unigene:Sbi.21143	TIGRFAMs:TIGR00408	UniParc:UPI0001A88EE8	RefSeq:XP_002441274.1	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:53048144..53055970

Molecular Weight (calculated)

57973.4 Da

IEP (calculated)

7.376

GRAVY (calculated)

-0.443

Length

508 amino acids

Sequence
(BLAST)

001: MSTSKGGAAK GGGGKKKEVK KETKLGMAYK KDDNFGEWYS EVVVNSEMIE YYDISGCYIL RPWAMEIWEL LKEFFDAEIK KLKLKPYYFP LFVTENVLQK
101: EKDHIEGFAP EVAWVTKSGK SELEAPIAIR PTSETVMYPY FSKWIRSHRD LPLRCNQWCN VVRWEFSNPT PFIRSREFLW QEGHTAFATK EEADEEVLQI
201: LELYRRIYEE FLAVPVSKGR KSEMEKFAGG LYTTSVEAFI PNTGRGIQGA TSHCLGQNFA KMFDITFENE KGVREMVWQN SWAYTTRSIG VMVMTHGDDK
301: GLVLPPKVAP IQVIVIPVPY KDADTTAIKG ACESAVYTLN QSGFRADLDT RENYSPGWKY SHWEMKGVPL RIEIGPKDLA NKQVRIVRRD NGAKVDIPVT
401: NLVEEVKVLL DGIQKNLFKT AQEKRDACVQ VINTWDDFTT ALNNKRLILA AWCDEEEVEK DVKARTKGEL GAAKTLCTPF EQPELPEGTL CFASGKPAKK
501: WSFWGRSY

Best Arabidopsis Sequence Match ( AT3G62120.3 )
(BLAST)

001: MADPSEQKEK VVKEKVAKAS SSGQKKKDVK KETGLGLSVK KDENFGEWYS EVCKQDMIEY YDISGCYILR PWSMAIWEIM QIFFDAEIKK MKVKNCYFPL
101: FVSPGVLEKE KDHIEGFAPE VAWVTKSGKS DLEVPIAIRP TSETVMYPYY SKWIRGHRDL PLKLNQWCNV VRWEFSNPTP FIRSREFLWQ EGHTAFATKA
201: EADEEVLQIL ELYRRIYEEY LAVPVVKGMK SENEKFAGGL YTTSVEAFIP NTGRGVQGAT SHCLGQNFAK MFEINFENEK AETEMVWQNS WAYSTRTIGV
301: MIMTHGDDKG LVLPPKVASV QVVVIPVPYK DANTQGIYDA CTATASALCE AGIRAEEDLR DNYSPGWKYS DWEMKGVPLR IEIGPRDLEN DQVRTVRRDN
401: GVKEDIPRGS LVEHVKELLE KIQQNMYEVA KQKREACVQE VKTWDEFIKA LNEKKLILAP WCDEEEVERD VKARTKGETG AAKTLCSPFD QPELPEGTLC
501: FASGKPAKKW TYWGRSY

Arabidopsis Description

Proline--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.