CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62120.1	CDY42827	AT2G42580.1	19000166
AT3G62120.1	CDY51514	AT2G42580.1	19000166
AT3G62120.1	CDY55390	AT2G42580.1	19000166
AT3G62120.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007663.1-P	Field mustard	cytosol	96.12	96.49
AT3G62120.1	Thale cress	cytosol	92.43	89.81
CDY25092	Canola	cytosol	93.59	89.26
CDY11404	Canola	cytosol, mitochondrion, plastid, vacuole	96.7	89.09
CDX67878	Canola	cytosol	93.4	88.75
PGSC0003DMT400036645	Potato	cytosol	80.78	82.7
PGSC0003DMT400073336	Potato	cytosol	82.52	82.52
Solyc06g068320.2.1	Tomato	cytosol, extracellular, nucleus	82.33	82.33
KRG96602	Soybean	cytosol	82.33	82.33
KRH68339	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	82.14	82.14
GSMUA_Achr3P28360_001	Banana	cytosol	18.64	82.05
Solyc03g117330.2.1	Tomato	cytosol	79.81	81.55
VIT_07s0005g02620.t01	Wine grape	cytosol	80.39	80.23
TraesCS3D01G415200.1	Wheat	cytosol, golgi	77.86	79.41
TraesCS1B01G342200.1	Wheat	cytosol, golgi	77.67	79.21
TraesCS3B01G455000.1	Wheat	cytosol, extracellular, golgi	77.48	79.01
TraesCS3A01G419600.1	Wheat	cytosol	77.48	79.01
EES15248	Sorghum	cytosol	77.86	78.94
HORVU3Hr1G093050.2	Barley	cytosol	78.06	78.36
Zm00001d053196_P001	Maize	cytosol	77.28	78.35
EES19704	Sorghum	cytosol	77.09	78.15
TraesCS1D01G210600.3	Wheat	cytosol	77.48	77.78
Os12t0443700-01	Rice	cytosol	76.7	77.45
GSMUA_Achr4P09390_001	Banana	cytosol	79.03	74.0
CDX67877	Canola	cytosol	61.75	72.77
Zm00001d002585_P004	Maize	cytosol	72.23	71.13
TraesCS7D01G203800.1	Wheat	cytosol	67.38	70.67
TraesCS7A01G200500.1	Wheat	cytosol	67.18	70.47
TraesCS7B01G107300.1	Wheat	cytosol	67.38	70.39
CDY25091	Canola	cytosol	59.03	69.57
CDY30248	Canola	cytosol	19.42	68.97
KRH16405	Soybean	cytosol	17.86	68.66
HORVU7Hr1G041110.1	Barley	cytosol	66.41	68.54
CDY30246	Canola	cytosol	20.39	64.42
CDY05739	Canola	cytosol	14.56	63.03
HORVU4Hr1G079480.1	Barley	cytosol	4.27	62.86
CDX94184	Canola	cytosol, endoplasmic reticulum	16.89	61.7
CDY33873	Canola	cytosol	13.98	59.5
CDY67326	Canola	cytosol	16.89	58.39
CDX74456	Canola	cytosol	36.12	55.36
CDY30241	Canola	cytosol	36.7	54.62
KRH33484	Soybean	plastid	29.32	39.84
CDY27824	Canola	mitochondrion, plastid	39.22	37.76
CDY27062	Canola	plastid	39.22	37.27
CDX91656	Canola	plastid	36.5	37.08
CDY00534	Canola	cytosol	27.57	35.95

Protein Annotations

KEGG:00970+6.1.1.15	MapMan:17.2.17	Gene3D:3.30.110.30	Gene3D:3.30.930.10	Gene3D:3.40.50.800	GO:A0A078CNG2
InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	EnsemblPlants:CDX76618	ProteinID:CDX76618	ProteinID:CDX76618.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004827	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0006418	GO:GO:0006433	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00127078001	InterPro:IPR006195	InterPro:IPR017449	InterPro:IPR036621	HAMAP:MF_01571
PFAM:PF00587	PFAM:PF03129	PFAM:PF09180	PRINTS:PR01046	PFscan:PS50862	PANTHER:PTHR43382
PANTHER:PTHR43382:SF2	InterPro:Pro-tRNA-ligase_IIa	InterPro:Pro-tRNA-ligase_IIa_arc-type	InterPro:Pro-tRNA_ligase_II_C	InterPro:Pro-tRNA_synth_II	InterPro:ProRS_core_arch_euk
SMART:SM00946	SUPFAM:SSF52954	SUPFAM:SSF55681	SUPFAM:SSF64586	TIGRFAMs:TIGR00408	UniParc:UPI0004EE3262
InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	SEG:seg	:	:	:

Description

BnaC08g32040D

Coordinates

chrLK031808:-:215178..218061

Molecular Weight (calculated)

58657.1 Da

IEP (calculated)

6.349

GRAVY (calculated)

-0.512

Length

515 amino acids

Sequence
(BLAST)

001: MAGPSGKKEK VDKAGPSGGG GKKKKDVKKE TGLGLSVKKD ENFGEWYSEV CKHEMIEYYD ISGCYILRPW SMAIWEIMHT FFDAEIKKMK VKNCYFPLFV
101: SPGVLEKEKD HIEGFAPEVA WVTKSGKSDL EVPIAIRPTS ETVMYPYYSK WIRGHRDLPL KLNQWCNVVR WEFSNPTPFI RSREFLWQEG HTAFATKEEA
201: DKEVLEILEL YRRIYEEYLA VPVVKGMKSE NEKFAGGLYT TSVEAFIPNT GRGVQGATSH CLGQNFAKMF EINFENEKGE TEMVWQNSWA YSTRTIGVMI
301: MTHGDDKGLI LPPKVASVQV VVIPVPYKDA NTQGIFDACT ATVAALSEAG IRAEEDLRDN YSPGWKYSNW EMKGVPLRIE IGPRDLENDQ VRTVRRDNGV
401: KEDIPRGSLV EHVKELLEKI QANMYEVAKQ KREACVEEIK TWDEFIVALN KKKLILAPWC DEEEVERDVK ARTKGETGAA KTLCSPFEQP ELPEGTLCFA
501: SGKPAKKWTY WGRSY

Best Arabidopsis Sequence Match ( AT3G62120.3 )
(BLAST)

001: MADPSEQKEK VVKEKVAKAS SSGQKKKDVK KETGLGLSVK KDENFGEWYS EVCKQDMIEY YDISGCYILR PWSMAIWEIM QIFFDAEIKK MKVKNCYFPL
101: FVSPGVLEKE KDHIEGFAPE VAWVTKSGKS DLEVPIAIRP TSETVMYPYY SKWIRGHRDL PLKLNQWCNV VRWEFSNPTP FIRSREFLWQ EGHTAFATKA
201: EADEEVLQIL ELYRRIYEEY LAVPVVKGMK SENEKFAGGL YTTSVEAFIP NTGRGVQGAT SHCLGQNFAK MFEINFENEK AETEMVWQNS WAYSTRTIGV
301: MIMTHGDDKG LVLPPKVASV QVVVIPVPYK DANTQGIYDA CTATASALCE AGIRAEEDLR DNYSPGWKYS DWEMKGVPLR IEIGPRDLEN DQVRTVRRDN
401: GVKEDIPRGS LVEHVKELLE KIQQNMYEVA KQKREACVQE VKTWDEFIKA LNEKKLILAP WCDEEEVERD VKARTKGETG AAKTLCSPFD QPELPEGTLC
501: FASGKPAKKW TYWGRSY

Arabidopsis Description

Proline--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.