CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74456	Canola	cytosol	91.62	94.35
CDY30248	Canola	cytosol	39.31	93.79
Bra017510.1-P	Field mustard	cytosol	38.15	91.03
Bra029197.1-P	Field mustard	cytosol	54.34	86.24
AT5G10880.1	Thale cress	cytosol	50.58	56.63
CDX67877	Canola	cytosol	50.58	40.05
HORVU4Hr1G079480.1	Barley	cytosol	4.05	40.0
CDY25091	Canola	cytosol	49.13	38.9
CDX76618	Canola	cytosol	54.62	36.7
TraesCS3D01G415200.1	Wheat	cytosol, golgi	51.73	35.45
TraesCS3B01G455000.1	Wheat	cytosol, extracellular, golgi	51.73	35.45
TraesCS1B01G342200.1	Wheat	cytosol, golgi	51.73	35.45
PGSC0003DMT400073336	Potato	cytosol	52.6	35.34
TraesCS1D01G210600.3	Wheat	cytosol	52.31	35.28
HORVU3Hr1G093050.2	Barley	cytosol	52.31	35.28
TraesCS3A01G419600.1	Wheat	cytosol	51.45	35.25
Zm00001d053196_P001	Maize	cytosol	51.73	35.24
EES19704	Sorghum	cytosol	51.45	35.04
PGSC0003DMT400036645	Potato	cytosol	50.87	34.99
Solyc06g068320.2.1	Tomato	cytosol, extracellular, nucleus	52.02	34.95
Solyc03g117330.2.1	Tomato	cytosol	50.87	34.92
Os12t0443700-01	Rice	cytosol	51.45	34.9
CDX67878	Canola	cytosol	54.34	34.69
EES15248	Sorghum	cytosol	50.87	34.65
CDY25092	Canola	cytosol	54.05	34.63
VIT_07s0005g02620.t01	Wine grape	cytosol	51.45	34.5
CDY11404	Canola	cytosol, mitochondrion, plastid, vacuole	55.2	34.17
KRG96602	Soybean	cytosol	50.29	33.79
KRH68339	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	50.0	33.59
Zm00001d002585_P004	Maize	cytosol	50.0	33.08
TraesCS7A01G200500.1	Wheat	cytosol	46.24	32.59
TraesCS7B01G107300.1	Wheat	cytosol	45.38	31.85
TraesCS7D01G203800.1	Wheat	cytosol	45.09	31.77
GSMUA_Achr4P09390_001	Banana	cytosol	50.29	31.64
HORVU7Hr1G041110.1	Barley	cytosol	45.38	31.46
GSMUA_Achr3P28360_001	Banana	cytosol	6.94	20.51
CDY30246	Canola	cytosol	9.54	20.25
CDY27062	Canola	plastid	30.92	19.74
CDY27824	Canola	mitochondrion, plastid	29.77	19.25
CDX91656	Canola	plastid	27.17	18.54
KRH16405	Soybean	cytosol	6.36	16.42
CDY05739	Canola	cytosol	5.49	15.97
CDY00534	Canola	cytosol	17.63	15.44
CDX94184	Canola	cytosol, endoplasmic reticulum	6.07	14.89
CDY33873	Canola	cytosol	4.91	14.05
CDY67326	Canola	cytosol	5.49	12.75
KRH33484	Soybean	plastid	11.27	10.29

Protein Annotations

KEGG:00970+6.1.1.15	Gene3D:3.30.110.30	Gene3D:3.30.930.10	Gene3D:3.40.50.800	MapMan:35.1	GO:A0A078GXK7
UniProt:A0A078GXK7	InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	EnsemblPlants:CDY30241	ProteinID:CDY30241	ProteinID:CDY30241.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004827	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0006433	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00044870001	InterPro:IPR017449	InterPro:IPR036621	PFAM:PF03129	PFAM:PF09180	PANTHER:PTHR43382
PANTHER:PTHR43382:SF2	InterPro:Pro-tRNA_ligase_II_C	InterPro:Pro-tRNA_synth_II	SMART:SM00946	SUPFAM:SSF52954	SUPFAM:SSF55681
SUPFAM:SSF64586	UniParc:UPI0004EEA8C6	SEG:seg	:	:	:

Description

BnaC04g31520DBnaC04g31520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXK7]

Coordinates

chrLK032251:-:7835..9451

Molecular Weight (calculated)

39768.7 Da

IEP (calculated)

6.787

GRAVY (calculated)

-0.682

Length

346 amino acids

Sequence
(BLAST)

001: MSKSGREEDV RSSSSQSMVE KTLEVAKASV FGERKEKEMK KDTRLGISAK KDEDFPSWYS QVCRFGELIT LSDTKGLYIL EPSATKIWNT LRSYMDAELE
101: KLGGVEEKKF PMLIKRDSLE KEKDHIEVMA MTHGDEKGLV LPPKVARHQV VVIPVPFKGA DTKRISQECQ AVKATLQGAG VRVIVDEREN YACGWKYADW
201: EMKGVPLRIE LGPRDLEKNQ VRVVRRDTRV KMDVLRVDLV EKVKDLLEGI QRDLYDESKR KLEESIQKVE TWDEFKEALR LKKLVLAPWC DEVEVENDVK
301: ENTKGENEAG AKTLCTPFEQ PELREDTLCF ASGKPAKKWT YWGRSY

Best Arabidopsis Sequence Match ( AT5G10880.1 )
(BLAST)

001: MVKETRLGIT AKKDEDFGKW YSEACRFGEL VEYYESVKGC YILKPSGISD EYLERYTNTT LKGLLQRLLG LQELVDKRTQ GPPFEAACMT HGDDKGLVFP
101: PKVAPVQVVV IHVPIKGAAD YQELCDACEA VESTLLGAGI RAEADIRDNY SCGWKYADQE LTGVPLRIET GPRDLANDQV RIVTRDNGAK MDVKRGDLIE
201: QVKDLLEKIQ SNLYDVAKRK VEECTQKVET WDEFVEALSQ KKLILAPWCD KVEVEKDVKR RTRGDETGGG GGGAKTLCTP LEQPELGEET LCFASGKPAK
301: KWSYWGRSY

Arabidopsis Description

Uncharacterized protein T30N20_150 [Source:UniProtKB/TrEMBL;Acc:Q9LEV2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.