CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91656	Canola	plastid	86.73	91.52
CDY27062	Canola	plastid	92.71	91.51
AT5G52520.1	Thale cress	plastid	91.59	90.24
VIT_16s0050g00960.t01	Wine grape	cytosol	72.34	86.38
GSMUA_Achr5P23600_001	Banana	cytosol	69.91	83.48
GSMUA_Achr7P07770_001	Banana	cytosol	2.43	81.25
Os07t0165000-01	Rice	cytosol, mitochondrion, plastid	55.51	78.78
KRH38393	Soybean	plastid	78.5	76.92
KRH08879	Soybean	plastid	78.32	76.74
CDY00534	Canola	cytosol	56.45	76.46
EER95900	Sorghum	mitochondrion	75.33	76.04
PGSC0003DMT400070798	Potato	plastid	76.45	74.77
Zm00001d018870_P001	Maize	plastid	74.95	74.67
Solyc01g096870.2.1	Tomato	plastid	76.07	74.41
TraesCS2A01G246200.1	Wheat	mitochondrion	73.46	72.64
TraesCS2D01G248600.1	Wheat	mitochondrion	73.46	72.64
TraesCS2B01G270500.1	Wheat	mitochondrion	73.08	72.27
HORVU2Hr1G057880.3	Barley	mitochondrion	72.9	72.09
GSMUA_Achr7P07780_001	Banana	cytosol	16.26	59.18
CDY30246	Canola	cytosol	13.83	45.4
CDX94184	Canola	cytosol, endoplasmic reticulum	10.65	40.43
CDY05739	Canola	cytosol	8.97	40.34
CDX67877	Canola	cytosol	32.34	39.59
CDX76618	Canola	cytosol	37.76	39.22
CDY25092	Canola	cytosol	38.13	37.78
CDY25091	Canola	cytosol	30.84	37.76
CDX67878	Canola	cytosol	38.13	37.64
CDY11404	Canola	cytosol, mitochondrion, plastid, vacuole	38.88	37.21
CDY33873	Canola	cytosol	8.41	37.19
CDY67326	Canola	cytosol	10.09	36.24
CDY30248	Canola	cytosol	9.53	35.17
CDX74456	Canola	cytosol	19.25	30.65
CDY30241	Canola	cytosol	19.25	29.77

Protein Annotations

KEGG:00970+6.1.1.15	MapMan:17.2.17	Gene3D:3.30.110.30	Gene3D:3.30.930.10	Gene3D:3.40.50.800	GO:A0A078GRI0
UniProt:A0A078GRI0	InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	EnsemblPlants:CDY27824	ProteinID:CDY27824	ProteinID:CDY27824.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004827	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006412	GO:GO:0006418	GO:GO:0006433	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00038640001	InterPro:IPR006195	InterPro:IPR017449	InterPro:IPR036621
HAMAP:MF_01571	PFAM:PF00587	PFAM:PF03129	PFAM:PF09180	PRINTS:PR01046	PFscan:PS50862
PANTHER:PTHR43382	PANTHER:PTHR43382:SF3	InterPro:Pro-tRNA-ligase_IIa	InterPro:Pro-tRNA-ligase_IIa_arc-type	InterPro:Pro-tRNA_ligase_II_C	InterPro:Pro-tRNA_synth_II
InterPro:ProRS_core_arch_euk	SMART:SM00946	SUPFAM:SSF52954	SUPFAM:SSF55681	SUPFAM:SSF64586	TIGRFAMs:TIGR00408
UniParc:UPI0004EE01AD	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	SEG:seg	:	:

Description

BnaC09g28510DBnaC09g28510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRI0]

Coordinates

chrLK032210:+:117938..120829

Molecular Weight (calculated)

59868.4 Da

IEP (calculated)

8.010

GRAVY (calculated)

-0.292

Length

535 amino acids

Sequence
(BLAST)

001: MVASLRLPSL TSLLFPATTR YPAALRRTVC LRNRPASGFA SGTAASTDAH RLRSKQAVTP RSQDFNAWYL DVIASAELAD HGPVRGTMVI RPYGYAIWEA
101: IQEYLNVKFK ETGHSNMYFP QFIPYSFIEK EASHVEGFSP ELALVTVGGG SELEEKLVVR PTSETIVNHM FTQWIHSYRD LPLMINQWVN VTRWEMRTKP
201: FIRTLEFLWQ EGHTAHATPE EAEKEAKQMI EIYTRFAFEQ TAIPVIGGRK SKLETFAGAD KTYTIEAMMG DRKALQAGTS HNLGQNFSRA FGTQFQDENG
301: ERQHVWQTSW AVSTRFVGGI IMTHGDDTGL MLPPKIAPIQ VVIVPIWKKE TEKTGVLSAA SSVKEVLQAA GVRAKLDDTS ERTAGWKFNF WEMKGVPIRI
401: EIGPRDVSSN CVVVSRRDIP GKAGKVFGIS MEPSTLVAYV KEKLDEIQSS LLEKAVSFRD SNIVDVNSYE ELKVAISSGK WARGPWSASD SDEQRVKEET
501: GATIRCFPFE QTQGIKTCLM TGNRAEEVAI FAKSY

Best Arabidopsis Sequence Match ( AT5G52520.1 )
(BLAST)

001: MVSSSLRLPS LTSLLFPATT RYPATLRRTV CLRNRPLSGF ATAPSGTASP ETKSSEVDRL RSDRAVTPRS QDFNAWYLDV IASAELADYG PVRGTMVIRP
101: YGYAIWEAIQ DYLNVKFKET GHSNMYFPQF IPYSFIEKEA SHVEGFSPEL ALVTVGGGKE LEEKLVVRPT SETIVNHMFT QWIHSYRDLP LMINQWANVT
201: RWEMRTKPFI RTLEFLWQEG HTAHATPEEA EKEAKQMIEI YTRFAFEQTA IPVIPGRKSK LETFAGADIT YTIEAMMGDR KALQAGTSHN LGQNFSRAFG
301: TQFADENGER QHVWQTSWAV STRFVGGIIM THGDDTGLML PPKIAPIQVV IVPIWKKDTE KTGVLSAASS VKEALQTAGV RVKLDDTDQR TPGWKFNFWE
401: MKGIPLRIEI GPRDVSSNSV VVSRRDVPGK AGKVFGISME PSTLVAYVKE KLDEIQTSLL EKALSFRDSN IVDVNSYAEL KDAISSGKWA RGPWSASDAD
501: EQRVKEETGA TIRCFPFEQT QGTKTCLMTG NPAEEVAIFA KSY

Arabidopsis Description

OVA6Proline--tRNA ligase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.