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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 1
  • mitochondrion 7
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
 plastid: 20089766
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
msms PMID: 27297264 doi
D Dahal, KJ Newton, BP Mooney
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID: 20089766 doi
G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
msms PMID: 23198870 doi
M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID: 22065420 doi
W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os07t0165000-01 Rice cytosol, mitochondrion, plastid 65.55 93.37
EER95900 Sorghum mitochondrion 90.5 91.7
GSMUA_Achr7P07770_001 Banana cytosol 2.61 87.5
TraesCS2D01G248600.1 Wheat mitochondrion 86.96 86.32
TraesCS2A01G246200.1 Wheat mitochondrion 86.78 86.14
TraesCS2B01G270500.1 Wheat mitochondrion 86.41 85.77
HORVU2Hr1G057880.3 Barley mitochondrion 86.41 85.77
GSMUA_Achr5P23600_001 Banana cytosol 71.32 85.49
VIT_16s0050g00960.t01 Wine grape cytosol 70.58 84.6
AT5G52520.1 Thale cress plastid 76.72 75.87
CDY27062 Canola plastid 76.35 75.65
Bra022597.1-P Field mustard plastid 76.16 75.46
CDX91656 Canola plastid 71.14 75.35
CDY27824 Canola mitochondrion, plastid 74.67 74.95
KRH08879 Soybean plastid 75.98 74.73
Solyc01g096870.2.1 Tomato plastid 75.61 74.22
KRH38393 Soybean plastid 75.23 73.99
PGSC0003DMT400070798 Potato plastid 75.23 73.86
Bra028313.1-P Field mustard cytosol 49.91 65.69
CDY00534 Canola cytosol 46.55 63.29
GSMUA_Achr7P07780_001 Banana cytosol 17.32 63.27
Zm00001d053196_P001 Maize cytosol 39.66 41.93
Zm00001d002585_P004 Maize cytosol 37.24 38.24
Protein Annotations
KEGG:00970+6.1.1.15EntrezGene:100283555MapMan:17.2.17Gene3D:3.30.110.30Gene3D:3.30.930.10Gene3D:3.40.50.800
UniProt:A0A1D6HSW9InterPro:Anticodon-bdInterPro:Anticodon-bd_dom_sfGO:GO:0000003GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004812GO:GO:0004827GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0006139GO:GO:0006412
GO:GO:0006418GO:GO:0006433GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009507GO:GO:0009536GO:GO:0009553GO:GO:0009570GO:GO:0009791GO:GO:0009908
GO:GO:0009987GO:GO:0010109GO:GO:0015979GO:GO:0016874GO:GO:0019538GO:GO:0048316
GO:GO:0048481InterPro:IPR006195InterPro:IPR017449InterPro:IPR036621HAMAP:MF_01571ProteinID:ONM51492.1
PFAM:PF00587PFAM:PF03129PFAM:PF09180PRINTS:PR01046PFscan:PS50862PANTHER:PTHR43382
PANTHER:PTHR43382:SF3InterPro:Pro-tRNA-ligase_IIaInterPro:Pro-tRNA-ligase_IIa_arc-typeInterPro:Pro-tRNA_ligase_II_CInterPro:Pro-tRNA_synth_IIInterPro:ProRS_core_arch_euk
SMART:SM00946SUPFAM:SSF52954SUPFAM:SSF55681SUPFAM:SSF64586TIGRFAMs:TIGR00408UniParc:UPI0006B1C595
EnsemblPlantsGene:Zm00001d018870EnsemblPlants:Zm00001d018870_P001EnsemblPlants:Zm00001d018870_T001InterPro:aa-tRNA-synt_IIbInterPro:aa-tRNA-synth_IISEG:seg
Description
Proline--tRNA ligase chloroplastic/mitochondrial
Coordinates
chr7:+:7864146..7869448
Molecular Weight (calculated)
59743.5 Da
IEP (calculated)
7.404
GRAVY (calculated)
-0.292
Length
537 amino acids
Sequence
(BLAST)
001: MASLLRLPSL LSPSKPLLRR RLPAARLAAS AASRGQASAT AGAAAPAAAE TRGGDREGQV TPRSADFNAW YTDVIAAAEL ADYGPVRGTM VIRPYGYAIW
101: EAIQDYLNVK FKETGHSNMY FPQFIPYSFI EKEASHVEGF SPELALVTIG GGKELEEKLV VRPTSETIVN HMFTKWIQSY RDLPLMINQW ANVTRWEMRT
201: KPFIRTLEFL WQEGHTAHAT LEEAEKEAMQ MIDVYTKFAF EHAAIPVIPG RKSRVETFAG ANRTYTIEAM MGDKKALQAG TSHNLGQNFS RAFGTQFMDE
301: NGQIEHVWQT SWAISTRFVG GIIMTHGDDA GLMLPPRIAP IQVIIVPIWK KGDEKAVVVE AVDSVQKILK EAGIRVKVDD SELRTPGWKF NHYEMKGVPV
401: RIEIGPRDVT NKSVVVSRRD VPGKQGKEFG VSMEPSILVN HIKGRLDDIQ ASLLQKAITF RDSNIVDVSS YGELKEAISE GKWARGPWSA SDADELKVKE
501: ETSATIRCYP FEQPEGTKKC FMTGNPAEEV AIFAKSY
Best Arabidopsis Sequence Match ( AT5G52520.1 )
(BLAST)
001: MVSSSLRLPS LTSLLFPATT RYPATLRRTV CLRNRPLSGF ATAPSGTASP ETKSSEVDRL RSDRAVTPRS QDFNAWYLDV IASAELADYG PVRGTMVIRP
101: YGYAIWEAIQ DYLNVKFKET GHSNMYFPQF IPYSFIEKEA SHVEGFSPEL ALVTVGGGKE LEEKLVVRPT SETIVNHMFT QWIHSYRDLP LMINQWANVT
201: RWEMRTKPFI RTLEFLWQEG HTAHATPEEA EKEAKQMIEI YTRFAFEQTA IPVIPGRKSK LETFAGADIT YTIEAMMGDR KALQAGTSHN LGQNFSRAFG
301: TQFADENGER QHVWQTSWAV STRFVGGIIM THGDDTGLML PPKIAPIQVV IVPIWKKDTE KTGVLSAASS VKEALQTAGV RVKLDDTDQR TPGWKFNFWE
401: MKGIPLRIEI GPRDVSSNSV VVSRRDVPGK AGKVFGISME PSTLVAYVKE KLDEIQTSLL EKALSFRDSN IVDVNSYAEL KDAISSGKWA RGPWSASDAD
501: EQRVKEETGA TIRCFPFEQT QGTKTCLMTG NPAEEVAIFA KSY
Arabidopsis Description
OVA6Proline--tRNA ligase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR6]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.