Factsheet for TraesCS2D01G248600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G246200.1	Wheat	mitochondrion	99.26	99.26
TraesCS2B01G270500.1	Wheat	mitochondrion	98.89	98.89
HORVU2Hr1G057880.3	Barley	mitochondrion	97.41	97.41
GSMUA_Achr7P07770_001	Banana	cytosol	2.77	93.75
Os07t0165000-01	Rice	cytosol, mitochondrion, plastid	65.25	93.63
Zm00001d018870_P001	Maize	plastid	86.32	86.96
EER95900	Sorghum	mitochondrion	84.66	86.42
GSMUA_Achr5P23600_001	Banana	cytosol	71.16	85.94
VIT_16s0050g00960.t01	Wine grape	cytosol	69.69	84.15
AT5G52520.1	Thale cress	plastid	75.05	74.77
CDY27062	Canola	plastid	74.31	74.17
PGSC0003DMT400070798	Potato	plastid	74.86	74.04
KRH08879	Soybean	plastid	74.68	73.99
KRH38393	Soybean	plastid	74.68	73.99
Bra022597.1-P	Field mustard	plastid	74.12	73.99
Solyc01g096870.2.1	Tomato	plastid	74.49	73.67
CDX91656	Canola	plastid	68.95	73.57
CDY27824	Canola	mitochondrion, plastid	72.64	73.46
GSMUA_Achr7P07780_001	Banana	cytosol	17.93	65.99
Bra028313.1-P	Field mustard	cytosol	49.17	65.2
CDY00534	Canola	cytosol	46.03	63.04
TraesCS3D01G415200.1	Wheat	cytosol, golgi	38.26	40.99
TraesCS1D01G210600.3	Wheat	cytosol	37.71	39.77
TraesCS7D01G203800.1	Wheat	cytosol	35.86	39.51

Protein Annotations

KEGG:00970+6.1.1.15	MapMan:17.2.17	Gene3D:3.30.110.30	Gene3D:3.30.930.10	Gene3D:3.40.50.800	InterPro:Anticodon-bd
InterPro:Anticodon-bd_dom_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004827
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006433	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR006195	InterPro:IPR017449	InterPro:IPR036621
HAMAP:MF_01571	PFAM:PF00587	PFAM:PF03129	PFAM:PF09180	PRINTS:PR01046	PFscan:PS50862
PANTHER:PTHR43382	PANTHER:PTHR43382:SF3	InterPro:Pro-tRNA-ligase_IIa	InterPro:Pro-tRNA-ligase_IIa_arc-type	InterPro:Pro-tRNA_ligase_II_C	InterPro:Pro-tRNA_synth_II
InterPro:ProRS_core_arch_euk	SMART:SM00946	SUPFAM:SSF52954	SUPFAM:SSF55681	SUPFAM:SSF64586	SignalP:SignalP-noTM
TIGRFAMs:TIGR00408	EnsemblPlantsGene:TraesCS2D01G248600	EnsemblPlants:TraesCS2D01G248600.1	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	TIGR:cd00778
TIGR:cd00862	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2D:-:293146677..293155911

Molecular Weight (calculated)

60527.6 Da

IEP (calculated)

7.122

GRAVY (calculated)

-0.291

Length

541 amino acids

Sequence
(BLAST)

001: MASLLRLPSL LVPAAARPAA LLRHRGRCLH TSPARLFPAA TTAGASSAAP VKMETRGGDR EGQVTPRSTD FNAWYTDVIA AAELADYGPV RGTMVIRPYG
101: YAIWEAIQDY LNVKFKETGH SNMYFPQFIP YSFIEKEASH VQGFSPELAV VTIGGGKELE EKLVVRPTSE TIVNHMFTKW IQSYRDLPLM INQWANVTRW
201: EMRTKPFIRT LEFLWQEGHT AHATLEEAEK EAMQMIDVYT KFAYEQAAIP VIPGRKSRVE TFAGADRTYT IEAMMGDKKA LQAGTSHNLG QNFSRAFETQ
301: FMDENGQLEH VWQTSWAIST RFVGGIIMTH GDDAGLMLPP RIAPIQVVIV PIWKKGDEKG VVMEAVASVQ NTLKEAGIRV KVDDSELRTP GWKFNFYEMK
401: GVPIRIELGP RDVKNRSVVL SRRDVPGKQG KEFGISMEPS ILVDHIKGRL EEIQASLLQK AITFRDSNIV DVNSYGELKE VISEGKWARG PWSASDADEL
501: KVKEETSATI RCFPFDQPEG AKKCFMTGNP ADEVAIFAKS Y

Best Arabidopsis Sequence Match ( AT5G52520.1 )
(BLAST)

001: MVSSSLRLPS LTSLLFPATT RYPATLRRTV CLRNRPLSGF ATAPSGTASP ETKSSEVDRL RSDRAVTPRS QDFNAWYLDV IASAELADYG PVRGTMVIRP
101: YGYAIWEAIQ DYLNVKFKET GHSNMYFPQF IPYSFIEKEA SHVEGFSPEL ALVTVGGGKE LEEKLVVRPT SETIVNHMFT QWIHSYRDLP LMINQWANVT
201: RWEMRTKPFI RTLEFLWQEG HTAHATPEEA EKEAKQMIEI YTRFAFEQTA IPVIPGRKSK LETFAGADIT YTIEAMMGDR KALQAGTSHN LGQNFSRAFG
301: TQFADENGER QHVWQTSWAV STRFVGGIIM THGDDTGLML PPKIAPIQVV IVPIWKKDTE KTGVLSAASS VKEALQTAGV RVKLDDTDQR TPGWKFNFWE
401: MKGIPLRIEI GPRDVSSNSV VVSRRDVPGK AGKVFGISME PSTLVAYVKE KLDEIQTSLL EKALSFRDSN IVDVNSYAEL KDAISSGKWA RGPWSASDAD
501: EQRVKEETGA TIRCFPFEQT QGTKTCLMTG NPAEEVAIFA KSY

Arabidopsis Description

OVA6Proline--tRNA ligase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.