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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • cytosol 2
  • mitochondrion 5
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:cytosol, mitochondrion
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:mitochondrion
YLoc:mitochondrion
 plastid: 20363867
plastid: 22908117
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400070798 Potato plastid 98.72 98.72
VIT_16s0050g00960.t01 Wine grape cytosol 71.66 87.5
GSMUA_Achr7P07770_001 Banana cytosol 2.56 87.5
GSMUA_Achr5P23600_001 Banana cytosol 70.02 85.49
Os07t0165000-01 Rice cytosol, mitochondrion, plastid 55.94 81.17
KRH38393 Soybean plastid 78.25 78.39
KRH08879 Soybean plastid 78.25 78.39
AT5G52520.1 Thale cress plastid 76.42 76.98
EER95900 Sorghum mitochondrion 74.41 76.79
CDY27824 Canola mitochondrion, plastid 74.41 76.07
Zm00001d018870_P001 Maize plastid 74.22 75.61
CDX91656 Canola plastid 70.02 75.54
Bra022597.1-P Field mustard plastid 74.77 75.46
CDY27062 Canola plastid 74.77 75.46
TraesCS2A01G246200.1 Wheat mitochondrion 73.86 74.68
TraesCS2D01G248600.1 Wheat mitochondrion 73.67 74.49
TraesCS2B01G270500.1 Wheat mitochondrion 73.31 74.12
HORVU2Hr1G057880.3 Barley mitochondrion 73.13 73.94
Bra028313.1-P Field mustard cytosol 50.82 68.14
CDY00534 Canola cytosol 47.53 65.82
GSMUA_Achr7P07780_001 Banana cytosol 15.54 57.82
Solyc06g068320.2.1 Tomato cytosol, extracellular, nucleus 37.48 39.81
Solyc03g117330.2.1 Tomato cytosol 35.83 38.89
Protein Annotations
KEGG:00970+6.1.1.15MapMan:17.2.17Gene3D:3.30.110.30Gene3D:3.30.930.10Gene3D:3.40.50.800InterPro:Anticodon-bd
InterPro:Anticodon-bd_dom_sfGO:GO:0000003GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004812
GO:GO:0004827GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005739GO:GO:0006139GO:GO:0006412GO:GO:0006418GO:GO:0006433
GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009507GO:GO:0009536
GO:GO:0009553GO:GO:0009570GO:GO:0009791GO:GO:0009908GO:GO:0009987GO:GO:0010109
GO:GO:0015979GO:GO:0017101GO:GO:0019538GO:GO:0048316GO:GO:0048481InterPro:IPR006195
InterPro:IPR017449InterPro:IPR036621UniProt:K4B075HAMAP:MF_01571PFAM:PF00587PFAM:PF03129
PFAM:PF09180PRINTS:PR01046PFscan:PS50862PANTHER:PTHR43382PANTHER:PTHR43382:SF3InterPro:Pro-tRNA-ligase_IIa
InterPro:Pro-tRNA-ligase_IIa_arc-typeInterPro:Pro-tRNA_ligase_II_CInterPro:Pro-tRNA_synth_IIInterPro:ProRS_core_arch_eukSMART:SM00946SUPFAM:SSF52954
SUPFAM:SSF55681SUPFAM:SSF64586EnsemblPlantsGene:Solyc01g096870.2EnsemblPlants:Solyc01g096870.2.1TIGRFAMs:TIGR00408UniParc:UPI0002767C4F
InterPro:aa-tRNA-synt_IIbInterPro:aa-tRNA-synth_IISEG:seg:::
Description
Proline--tRNA ligase, chloroplastic/mitochondrial [Source:Projected from Arabidopsis thaliana (AT5G52520) UniProtKB/Swiss-Prot;Acc:Q9FYR6]
Coordinates
chr1:+:87866244..87872211
Molecular Weight (calculated)
61139.9 Da
IEP (calculated)
6.872
GRAVY (calculated)
-0.352
Length
547 amino acids
Sequence
(BLAST)
001: MGALRLPALT SIFTSSSSVR SSPAILPLKH RLRLPLRRPF SAQSTTEKVV APELGDGKGK VVDKEKDRVI TPRSQDFNAW YLDVIANAEL ADYGPVRGTM
101: VIRPYGYAIW EAIQEYMNVK FKETGHSNMY FPQFIPYSFI EKEASHVEGF SPELALVTVG GGKELEEKLV VRPTSETIVN HMFTQWIHSY RDLPLMINQW
201: ANVTRWEMRT KPFIRTLEFL WQEGHTAHAT AEEAEEEAMQ MIDVYTKFAY EQAAIPVIAG RKSRVETFAG ASTTYTIEAM MGDRKALQAG TSHNLGQNFS
301: RAFGTQFTDE NGQRQHVWQT SWAISTRFVG GIIMTHGDDA GLLLPPRLAP VQVIIVPIWK KDNEKAGVLT ASSSVKESLQ AAGIKVKIDD SDQRTPGWKF
401: NYYEMKGVPL RIEIGPRDVS SGTLVISRRD VPGKQGKVFG ISMEPSALVA YVKDKLNEVQ SSLLERATTF RDSNIMDVSS YDELKDAIAQ GKWARGPWSA
501: GDEEESKVKE ETGATIRCFP FEQPEGPKKC LMTGNSADEV AIFAKSY
Best Arabidopsis Sequence Match ( AT5G52520.1 )
(BLAST)
001: MVSSSLRLPS LTSLLFPATT RYPATLRRTV CLRNRPLSGF ATAPSGTASP ETKSSEVDRL RSDRAVTPRS QDFNAWYLDV IASAELADYG PVRGTMVIRP
101: YGYAIWEAIQ DYLNVKFKET GHSNMYFPQF IPYSFIEKEA SHVEGFSPEL ALVTVGGGKE LEEKLVVRPT SETIVNHMFT QWIHSYRDLP LMINQWANVT
201: RWEMRTKPFI RTLEFLWQEG HTAHATPEEA EKEAKQMIEI YTRFAFEQTA IPVIPGRKSK LETFAGADIT YTIEAMMGDR KALQAGTSHN LGQNFSRAFG
301: TQFADENGER QHVWQTSWAV STRFVGGIIM THGDDTGLML PPKIAPIQVV IVPIWKKDTE KTGVLSAASS VKEALQTAGV RVKLDDTDQR TPGWKFNFWE
401: MKGIPLRIEI GPRDVSSNSV VVSRRDVPGK AGKVFGISME PSTLVAYVKE KLDEIQTSLL EKALSFRDSN IVDVNSYAEL KDAISSGKWA RGPWSASDAD
501: EQRVKEETGA TIRCFPFEQT QGTKTCLMTG NPAEEVAIFA KSY
Arabidopsis Description
OVA6Proline--tRNA ligase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR6]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.