CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38393	Soybean	plastid	97.25	97.25
VIT_16s0050g00960.t01	Wine grape	cytosol	73.81	89.96
GSMUA_Achr7P07770_001	Banana	cytosol	2.56	87.5
GSMUA_Achr5P23600_001	Banana	cytosol	69.6	84.82
Os07t0165000-01	Rice	cytosol, mitochondrion, plastid	56.41	81.7
PGSC0003DMT400070798	Potato	plastid	78.94	78.79
CDY27824	Canola	mitochondrion, plastid	76.74	78.32
Solyc01g096870.2.1	Tomato	plastid	78.39	78.25
AT5G52520.1	Thale cress	plastid	77.66	78.08
CDY27062	Canola	plastid	77.29	77.86
Bra022597.1-P	Field mustard	plastid	77.11	77.68
CDX91656	Canola	plastid	71.98	77.51
EER95900	Sorghum	mitochondrion	74.91	77.17
Zm00001d018870_P001	Maize	plastid	74.73	75.98
TraesCS2A01G246200.1	Wheat	mitochondrion	74.18	74.86
TraesCS2D01G248600.1	Wheat	mitochondrion	73.99	74.68
TraesCS2B01G270500.1	Wheat	mitochondrion	73.63	74.31
HORVU2Hr1G057880.3	Barley	mitochondrion	73.26	73.94
Bra028313.1-P	Field mustard	cytosol	51.1	68.38
CDY00534	Canola	cytosol	47.8	66.08
GSMUA_Achr7P07780_001	Banana	cytosol	15.57	57.82
KRH68339	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	37.55	39.81
KRG96602	Soybean	cytosol	37.36	39.61
KRH16405	Soybean	cytosol	8.06	32.84
KRH33484	Soybean	plastid	14.1	20.32

Protein Annotations

KEGG:00970+6.1.1.15	EntrezGene:100788013	MapMan:17.2.17	Gene3D:3.30.110.30	Gene3D:3.30.930.10	Gene3D:3.40.50.800
EMBL:ACUP02010214	InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	EnsemblPlantsGene:GLYMA_16G179800	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004812	GO:GO:0004827	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418
GO:GO:0006433	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0017101
GO:GO:0019538	UniProt:I1MPJ4	InterPro:IPR006195	InterPro:IPR017449	InterPro:IPR036621	EnsemblPlants:KRH08879
ProteinID:KRH08879	ProteinID:KRH08879.1	HAMAP:MF_01571	PFAM:PF00587	PFAM:PF03129	PFAM:PF09180
PRINTS:PR01046	PFscan:PS50862	PANTHER:PTHR43382	PANTHER:PTHR43382:SF3	InterPro:Pro-tRNA-ligase_IIa	InterPro:Pro-tRNA-ligase_IIa_arc-type
InterPro:Pro-tRNA_ligase_II_C	InterPro:Pro-tRNA_synth_II	InterPro:ProRS_core_arch_euk	SMART:SM00946	SUPFAM:SSF52954	SUPFAM:SSF55681
SUPFAM:SSF64586	TIGRFAMs:TIGR00408	UniParc:UPI000233AC08	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	SEG:seg

Description

hypothetical protein

Coordinates

chr16:-:34022480..34027055

Molecular Weight (calculated)

61621.5 Da

IEP (calculated)

6.921

GRAVY (calculated)

-0.334

Length

546 amino acids

Sequence
(BLAST)

001: MLSLRLTSFT HLFSPPSSAV IARRSPAILR RRHHPRPWPL AASFSAQSSA AETQDRVENS KNRVTERVIT PRSQDFNAWY LDIIANAELA DYGPVRGTMV
101: IRPYGYAIWE AIQEYLNVKF KETGHSNMYF PQFIPYSFIE KEASHVEGFS PELALVTIGG GKELEEKLVV RPTSETIVNH MFTQWIHSYR DLPLMINQWA
201: NVTRWEMRTK PFVRTLEFLW QEGHTAHATP EEAEKEAIQM IDIYTRFAYE QAAIPVITGR KSKVETFAGA CKTYTIEAMM GDKKALQAGT SHNLGQNFAR
301: AFGTQFTDEN GLREYVWQTS WAISTRFVGG IIMTHGDDAG LMLPPKIAPI QVVIVPIWKK DDEKEAVLNA ASSVKDVLQR SGIKVKLDDS DQRTPGWKFN
401: FWEMKGVPLR IEIGPRDVAS GSVVISRRDI PGKQGKVFGI SMEPLNLEAY VKDKLDEIQS SLLERAIAFR DSNIVDVSTY DDLKAAISQG KWARGPWSAS
501: DEDELTVKEE TGATIRCFPF EQPQGVKRCL MTGNPAEEVA IFAKSY

Best Arabidopsis Sequence Match ( AT5G52520.1 )
(BLAST)

001: MVSSSLRLPS LTSLLFPATT RYPATLRRTV CLRNRPLSGF ATAPSGTASP ETKSSEVDRL RSDRAVTPRS QDFNAWYLDV IASAELADYG PVRGTMVIRP
101: YGYAIWEAIQ DYLNVKFKET GHSNMYFPQF IPYSFIEKEA SHVEGFSPEL ALVTVGGGKE LEEKLVVRPT SETIVNHMFT QWIHSYRDLP LMINQWANVT
201: RWEMRTKPFI RTLEFLWQEG HTAHATPEEA EKEAKQMIEI YTRFAFEQTA IPVIPGRKSK LETFAGADIT YTIEAMMGDR KALQAGTSHN LGQNFSRAFG
301: TQFADENGER QHVWQTSWAV STRFVGGIIM THGDDTGLML PPKIAPIQVV IVPIWKKDTE KTGVLSAASS VKEALQTAGV RVKLDDTDQR TPGWKFNFWE
401: MKGIPLRIEI GPRDVSSNSV VVSRRDVPGK AGKVFGISME PSTLVAYVKE KLDEIQTSLL EKALSFRDSN IVDVNSYAEL KDAISSGKWA RGPWSASDAD
501: EQRVKEETGA TIRCFPFEQT QGTKTCLMTG NPAEEVAIFA KSY

Arabidopsis Description

OVA6Proline--tRNA ligase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.