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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • plastid 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol, mitochondrion
PProwler:mitochondrion
YLoc:cytosol
 plastid: 17189339
mitochondrion: 19010998
msms PMID: 19010998 doi
S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar
Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.
msms PMID: 17189339 doi
T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky
Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr7P07770_001 Banana cytosol 3.71 87.5
GSMUA_Achr5P23600_001 Banana cytosol 84.08 70.76
VIT_16s0050g00960.t01 Wine grape cytosol 82.49 69.42
EER95900 Sorghum mitochondrion 93.1 66.23
Zm00001d018870_P001 Maize plastid 93.37 65.55
TraesCS2D01G248600.1 Wheat mitochondrion 93.63 65.25
TraesCS2A01G246200.1 Wheat mitochondrion 93.37 65.06
TraesCS2B01G270500.1 Wheat mitochondrion 93.1 64.88
HORVU2Hr1G057880.3 Barley mitochondrion 92.57 64.51
GSMUA_Achr7P07780_001 Banana cytosol 24.4 62.59
CDY00534 Canola cytosol 61.54 58.73
Bra028313.1-P Field mustard cytosol 62.07 57.35
PGSC0003DMT400070798 Potato plastid 82.49 56.86
KRH08879 Soybean plastid 81.7 56.41
Solyc01g096870.2.1 Tomato plastid 81.17 55.94
KRH38393 Soybean plastid 80.9 55.86
CDY27062 Canola plastid 80.11 55.72
Bra022597.1-P Field mustard plastid 79.84 55.54
CDY27824 Canola mitochondrion, plastid 78.78 55.51
AT5G52520.1 Thale cress plastid 79.84 55.43
CDX91656 Canola plastid 72.94 54.24
Os12t0443700-01 Rice cytosol 43.24 31.96
Protein Annotations
KEGG:00970+6.1.1.15MapMan:17.2.17Gene3D:3.30.110.30Gene3D:3.30.930.10Gene3D:3.40.50.800InterPro:Anticodon-bd
InterPro:Anticodon-bd_dom_sfProteinID:BAF20879.1ProteinID:BAT00197.1GO:GO:0000003GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004812GO:GO:0004827GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0006139GO:GO:0006412
GO:GO:0006418GO:GO:0006433GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009507GO:GO:0009536GO:GO:0009553GO:GO:0009570GO:GO:0009791GO:GO:0009908
GO:GO:0009987GO:GO:0010109GO:GO:0015979GO:GO:0017101GO:GO:0019538GO:GO:0048316
GO:GO:0048481InterPro:IPR006195InterPro:IPR017449InterPro:IPR036621EnsemblPlantsGene:Os07g0165000EnsemblPlants:Os07t0165000-01
PFAM:PF00587PFAM:PF03129PFAM:PF09180PFscan:PS50862PANTHER:PTHR43382PANTHER:PTHR43382:SF3
InterPro:Pro-tRNA_ligase_II_CInterPro:Pro-tRNA_synth_IIUniProt:Q0D8E4SMART:SM00946SUPFAM:SSF52954SUPFAM:SSF55681
SUPFAM:SSF64586UniParc:UPI0000E129EAInterPro:aa-tRNA-synt_IIbInterPro:aa-tRNA-synth_II::
Description
Similar to Prolyl-tRNA synthetase. (Os07t0165000-01)
Coordinates
chr7:+:3483093..3485872
Molecular Weight (calculated)
42436.8 Da
IEP (calculated)
6.895
GRAVY (calculated)
-0.332
Length
377 amino acids
Sequence
(BLAST)
001: VRPTSETIVN HMFTKWIQSY RDLPLMINQW ANVTRWEMRT KPFIRTLEFL WQEGHTAHAT LEEAEKEAMQ MIDVYTKFAY EQAAIPVIPG RKSRVETFAG
101: ANRTYTIEAM MGDRKALQAG TSHNLGQNFS RAFGTQFMDE NSQIEHVWQT SWAISTRFVG GIIMTHGDDA GLMLPPNIAP IQVVIVPIWK KGDEKSAVME
201: AVSSVQNTLK EAGIRVKVDD SELRTPGWKF NFYEMKGVPI RLEIGPRDVT NKSVVISRRD IPGKQGKEFG VSMDPSILVD HIKGRLVEIQ ASLLQKAIAF
301: RDSNIVDVSS YGELKEAIAE GKWARGPWSA SDADELKVKE ETSATIRCFP FEQPEGAKKC FMTGNPAEEV AIFAKSY
Best Arabidopsis Sequence Match ( AT5G52520.1 )
(BLAST)
001: MVSSSLRLPS LTSLLFPATT RYPATLRRTV CLRNRPLSGF ATAPSGTASP ETKSSEVDRL RSDRAVTPRS QDFNAWYLDV IASAELADYG PVRGTMVIRP
101: YGYAIWEAIQ DYLNVKFKET GHSNMYFPQF IPYSFIEKEA SHVEGFSPEL ALVTVGGGKE LEEKLVVRPT SETIVNHMFT QWIHSYRDLP LMINQWANVT
201: RWEMRTKPFI RTLEFLWQEG HTAHATPEEA EKEAKQMIEI YTRFAFEQTA IPVIPGRKSK LETFAGADIT YTIEAMMGDR KALQAGTSHN LGQNFSRAFG
301: TQFADENGER QHVWQTSWAV STRFVGGIIM THGDDTGLML PPKIAPIQVV IVPIWKKDTE KTGVLSAASS VKEALQTAGV RVKLDDTDQR TPGWKFNFWE
401: MKGIPLRIEI GPRDVSSNSV VVSRRDVPGK AGKVFGISME PSTLVAYVKE KLDEIQTSLL EKALSFRDSN IVDVNSYAEL KDAISSGKWA RGPWSASDAD
501: EQRVKEETGA TIRCFPFEQT QGTKTCLMTG NPAEEVAIFA KSY
Arabidopsis Description
OVA6Proline--tRNA ligase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR6]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.