CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0165000-01	Rice	cytosol, mitochondrion, plastid	66.23	93.1
Zm00001d018870_P001	Maize	plastid	91.7	90.5
GSMUA_Achr7P07770_001	Banana	cytosol	2.64	87.5
GSMUA_Achr5P23600_001	Banana	cytosol	72.45	85.71
VIT_16s0050g00960.t01	Wine grape	cytosol	71.89	85.04
TraesCS2D01G248600.1	Wheat	mitochondrion	86.42	84.66
TraesCS2A01G246200.1	Wheat	mitochondrion	86.23	84.47
TraesCS2B01G270500.1	Wheat	mitochondrion	85.85	84.1
HORVU2Hr1G057880.3	Barley	mitochondrion	85.66	83.92
AT5G52520.1	Thale cress	plastid	77.55	75.69
CDY27062	Canola	plastid	77.36	75.65
Bra022597.1-P	Field mustard	plastid	77.17	75.46
CDY27824	Canola	mitochondrion, plastid	76.04	75.33
CDX91656	Canola	plastid	71.89	75.15
KRH08879	Soybean	plastid	77.17	74.91
KRH38393	Soybean	plastid	76.98	74.73
Solyc01g096870.2.1	Tomato	plastid	76.79	74.41
PGSC0003DMT400070798	Potato	plastid	76.42	74.04
Bra028313.1-P	Field mustard	cytosol	50.75	65.93
CDY00534	Canola	cytosol	47.36	63.54
GSMUA_Achr7P07780_001	Banana	cytosol	17.55	63.27
EES15248	Sorghum	cytosol	39.25	40.94
EES19704	Sorghum	cytosol	38.87	40.55

Protein Annotations

KEGG:00970+6.1.1.15	MapMan:17.2.17	Gene3D:3.30.110.30	Gene3D:3.30.930.10	Gene3D:3.40.50.800	EntrezGene:8081162
InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	UniProt:C5XAA3	EnsemblPlants:EER95900	ProteinID:EER95900	ProteinID:EER95900.1
GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004827
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006433	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009553
GO:GO:0009570	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010109	GO:GO:0015979
GO:GO:0017101	GO:GO:0019538	GO:GO:0048316	GO:GO:0048481	InterPro:IPR006195	InterPro:IPR017449
InterPro:IPR036621	HAMAP:MF_01571	PFAM:PF00587	PFAM:PF03129	PFAM:PF09180	PRINTS:PR01046
PFscan:PS50862	PANTHER:PTHR43382	PANTHER:PTHR43382:SF3	InterPro:Pro-tRNA-ligase_IIa	InterPro:Pro-tRNA-ligase_IIa_arc-type	InterPro:Pro-tRNA_ligase_II_C
InterPro:Pro-tRNA_synth_II	InterPro:ProRS_core_arch_euk	SMART:SM00946	EnsemblPlantsGene:SORBI_3002G043600	SUPFAM:SSF52954	SUPFAM:SSF55681
SUPFAM:SSF64586	unigene:Sbi.9897	TIGRFAMs:TIGR00408	UniParc:UPI0001A82FA1	RefSeq:XP_002459379.1	InterPro:aa-tRNA-synt_IIb
InterPro:aa-tRNA-synth_II	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:4142460..4146915

Molecular Weight (calculated)

59201.8 Da

IEP (calculated)

7.437

GRAVY (calculated)

-0.330

Length

530 amino acids

Sequence
(BLAST)

001: MASLLRLPSL LSPSKGPLLR RRLPAARLAA SAASRGQASA AAETRGGDRE GQVTPRSADF NAWYTDVIAA AELADYGPVR GTMVIRPYGY AIWEAIQDYL
101: NVKFKETGHS NMYFPQFIPY SFIEKEASHV EGFSPELALV TIGGGKELEE KLVVRPTSET IVNHMFTKWI HSYRDLPLMI NQWANVTRWE MRTKPFIRTL
201: EFLWQEGHTA HATLEEAEKE AMQMIDVYTK FAYEHAAIPV IPGRKSKVET FAGANRTYTI EAMMGDKKAL QAGTSHNLGQ NFSRAFGTQF MDENGQIEHV
301: WQTSWAISTR FVGGIIMTHG DDAGLMLPPR IAPIQVIIVP IWKKGDEKSA VLEAVDSVQK ILKEAGIRVK VDDSELRTPG WKFNHYEMKG VPVRIEIGPR
401: DVTNKSVVVS RRDVPGKQGK EFGVSMEPSI LVNHIKGRLD DIQASLLQKA ITFRDSNIVD VNSYGELKDA ISEGKWARGP WSASDADELK VKEETSATIR
501: CYPFEQPEGT KKCFMTGNPA EEVAIFAKSY

Best Arabidopsis Sequence Match ( AT5G52520.1 )
(BLAST)

001: MVSSSLRLPS LTSLLFPATT RYPATLRRTV CLRNRPLSGF ATAPSGTASP ETKSSEVDRL RSDRAVTPRS QDFNAWYLDV IASAELADYG PVRGTMVIRP
101: YGYAIWEAIQ DYLNVKFKET GHSNMYFPQF IPYSFIEKEA SHVEGFSPEL ALVTVGGGKE LEEKLVVRPT SETIVNHMFT QWIHSYRDLP LMINQWANVT
201: RWEMRTKPFI RTLEFLWQEG HTAHATPEEA EKEAKQMIEI YTRFAFEQTA IPVIPGRKSK LETFAGADIT YTIEAMMGDR KALQAGTSHN LGQNFSRAFG
301: TQFADENGER QHVWQTSWAV STRFVGGIIM THGDDTGLML PPKIAPIQVV IVPIWKKDTE KTGVLSAASS VKEALQTAGV RVKLDDTDQR TPGWKFNFWE
401: MKGIPLRIEI GPRDVSSNSV VVSRRDVPGK AGKVFGISME PSTLVAYVKE KLDEIQTSLL EKALSFRDSN IVDVNSYAEL KDAISSGKWA RGPWSASDAD
501: EQRVKEETGA TIRCFPFEQT QGTKTCLMTG NPAEEVAIFA KSY

Arabidopsis Description

OVA6Proline--tRNA ligase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.