Factsheet for VIT_16s0050g00960.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P23600_001	Banana	cytosol	87.28	87.28
Os07t0165000-01	Rice	cytosol, mitochondrion, plastid	69.42	82.49
GSMUA_Achr7P07770_001	Banana	cytosol	2.68	75.0
KRH08879	Soybean	plastid	89.96	73.81
KRH38393	Soybean	plastid	89.29	73.26
AT5G52520.1	Thale cress	plastid	88.39	72.93
CDY27824	Canola	mitochondrion, plastid	86.38	72.34
PGSC0003DMT400070798	Potato	plastid	87.95	72.03
EER95900	Sorghum	mitochondrion	85.04	71.89
CDY27062	Canola	plastid	86.83	71.77
Solyc01g096870.2.1	Tomato	plastid	87.5	71.66
Bra022597.1-P	Field mustard	plastid	86.61	71.59
CDX91656	Canola	plastid	79.91	70.61
Zm00001d018870_P001	Maize	plastid	84.6	70.58
TraesCS2A01G246200.1	Wheat	mitochondrion	84.38	69.87
TraesCS2D01G248600.1	Wheat	mitochondrion	84.15	69.69
Bra028313.1-P	Field mustard	cytosol	63.17	69.36
TraesCS2B01G270500.1	Wheat	mitochondrion	83.71	69.32
HORVU2Hr1G057880.3	Barley	mitochondrion	83.48	69.13
CDY00534	Canola	cytosol	59.15	67.09
GSMUA_Achr7P07780_001	Banana	cytosol	20.76	63.27
VIT_07s0005g02620.t01	Wine grape	cytosol	42.86	37.21

Protein Annotations

KEGG:00970+6.1.1.15	EntrezGene:100262997	wikigene:100262997	MapMan:17.2.17	Gene3D:3.30.110.30	Gene3D:3.30.930.10
Gene3D:3.40.50.800	InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	ProteinID:CBI22672	ProteinID:CBI22672.3	UniProt:E0CUX2
EMBL:FN595243	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812
GO:GO:0004827	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006433
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009553	GO:GO:0009570	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010109
GO:GO:0015979	GO:GO:0017101	GO:GO:0019538	GO:GO:0048316	GO:GO:0048481	InterPro:IPR006195
InterPro:IPR017449	InterPro:IPR036621	EntrezGene:LOC100262997	wikigene:LOC100262997	HAMAP:MF_01571	PFAM:PF00587
PFAM:PF03129	PFAM:PF09180	PRINTS:PR01046	PFscan:PS50862	PANTHER:PTHR43382	PANTHER:PTHR43382:SF3
InterPro:Pro-tRNA-ligase_IIa	InterPro:Pro-tRNA-ligase_IIa_arc-type	InterPro:Pro-tRNA_ligase_II_C	InterPro:Pro-tRNA_synth_II	InterPro:ProRS_core_arch_euk	SMART:SM00946
SUPFAM:SSF52954	SUPFAM:SSF55681	SUPFAM:SSF64586	TIGR:TC65498	TIGR:TC70362	TIGRFAMs:TIGR00408
UniParc:UPI0001BE2102	ArrayExpress:VIT_16s0050g00960	EnsemblPlantsGene:VIT_16s0050g00960	EnsemblPlants:VIT_16s0050g00960.t01	unigene:Vvi.11730	RefSeq:XP_002272741
RefSeq:XP_002272741.1	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	:	:	:

Description

No Description!

Coordinates

chr16:+:17881731..17898114

Molecular Weight (calculated)

50507.3 Da

IEP (calculated)

6.267

GRAVY (calculated)

-0.323

Length

448 amino acids

Sequence
(BLAST)

001: MVIRPYGYAI WEAIQDYLNV KFKETGHSNM YFPQFIPYSF IEKEASHVEG FSPELALVTI GGGKELEEKL VVRPTSETIV NHMFTQWIHS YRDLPLMINQ
101: WANVTRWEMR TKPFVRTLEF LWQEGHTAHA TPEEAEKEAL QMIDVYTKFA YEQAAIPVIT GRKSKVETFA GAVRTYTIEA MMGDRKALQA GTSHNLGQNF
201: SRAFGTQFTD ENGQRQHIWQ TSWAVSTRFI GGIIMTHGDD AGLMLPPKIA PIQVVIIPIW KKADEKTGVL NAASSVTEVL KSANIKVKVD DSDQRTPGWK
301: FNFWEMKGVP LRIEIGPRDV SSGSVVISRR DVPGKQGKVF GISMEPSILV AYVKDKLDEI QSSLLERATS YRDSNIVDVS SYDELKEAIS QGKWARGPWS
401: ASDAEELRVK EETGATIRCF PFEQPQGMKT CLMTGDPAEE VALFAKSY

Best Arabidopsis Sequence Match ( AT5G52520.1 )
(BLAST)

001: MVSSSLRLPS LTSLLFPATT RYPATLRRTV CLRNRPLSGF ATAPSGTASP ETKSSEVDRL RSDRAVTPRS QDFNAWYLDV IASAELADYG PVRGTMVIRP
101: YGYAIWEAIQ DYLNVKFKET GHSNMYFPQF IPYSFIEKEA SHVEGFSPEL ALVTVGGGKE LEEKLVVRPT SETIVNHMFT QWIHSYRDLP LMINQWANVT
201: RWEMRTKPFI RTLEFLWQEG HTAHATPEEA EKEAKQMIEI YTRFAFEQTA IPVIPGRKSK LETFAGADIT YTIEAMMGDR KALQAGTSHN LGQNFSRAFG
301: TQFADENGER QHVWQTSWAV STRFVGGIIM THGDDTGLML PPKIAPIQVV IVPIWKKDTE KTGVLSAASS VKEALQTAGV RVKLDDTDQR TPGWKFNFWE
401: MKGIPLRIEI GPRDVSSNSV VVSRRDVPGK AGKVFGISME PSTLVAYVKE KLDEIQTSLL EKALSFRDSN IVDVNSYAEL KDAISSGKWA RGPWSASDAD
501: EQRVKEETGA TIRCFPFEQT QGTKTCLMTG NPAEEVAIFA KSY

Arabidopsis Description

OVA6Proline--tRNA ligase, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.