Factsheet for VIT_07s0005g02620.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0028g02240.t01
VIT_18s0001g09830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62120.1	VIT_12s0028g02240.t01	AT2G42580.1	19000166
AT3G62120.1	VIT_18s0001g09830.t01	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P28360_001	Banana	cytosol	18.99	83.76
KRG96602	Soybean	cytosol	82.75	82.91
KRH68339	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	82.56	82.72
PGSC0003DMT400036645	Potato	cytosol	80.23	82.31
Solyc03g117330.2.1	Tomato	cytosol	80.04	81.94
PGSC0003DMT400073336	Potato	cytosol	81.78	81.94
Solyc06g068320.2.1	Tomato	cytosol, extracellular, nucleus	81.59	81.75
Bra007663.1-P	Field mustard	cytosol	80.23	80.7
CDX76618	Canola	cytosol	80.23	80.39
TraesCS1B01G342200.1	Wheat	cytosol, golgi	77.52	79.21
TraesCS3B01G455000.1	Wheat	cytosol, extracellular, golgi	77.33	79.01
TraesCS3D01G415200.1	Wheat	cytosol, golgi	77.33	79.01
Bra003487.1-P	Field mustard	cytosol	76.36	78.8
Zm00001d053196_P001	Maize	cytosol	77.52	78.74
TraesCS3A01G419600.1	Wheat	cytosol	76.94	78.61
HORVU3Hr1G093050.2	Barley	cytosol	78.1	78.56
EES19704	Sorghum	cytosol	77.33	78.54
EES15248	Sorghum	cytosol	77.13	78.35
Os12t0443700-01	Rice	cytosol	77.13	78.04
TraesCS1D01G210600.3	Wheat	cytosol	77.13	77.58
AT3G62120.1	Thale cress	cytosol	79.07	76.98
GSMUA_Achr4P09390_001	Banana	cytosol	81.01	76.0
CDY25092	Canola	cytosol	79.07	75.56
CDX67878	Canola	cytosol	78.88	75.09
CDY11404	Canola	cytosol, mitochondrion, plastid, vacuole	80.81	74.6
Bra003486.1-P	Field mustard	cytosol	64.92	72.67
Zm00001d002585_P004	Maize	cytosol	72.48	71.51
TraesCS7A01G200500.1	Wheat	cytosol	67.64	71.08
TraesCS7B01G107300.1	Wheat	cytosol	67.83	70.99
TraesCS7D01G203800.1	Wheat	cytosol	67.25	70.67
KRH16405	Soybean	cytosol	18.02	69.4
CDX67877	Canola	cytosol	58.14	68.65
HORVU7Hr1G041110.1	Barley	cytosol	66.09	68.34
HORVU4Hr1G079480.1	Barley	cytosol	4.46	65.71
CDY25091	Canola	cytosol	55.43	65.45
CDY30248	Canola	cytosol	17.83	63.45
CDY30246	Canola	cytosol	19.77	62.58
Bra017510.1-P	Field mustard	cytosol	16.86	60.0
CDY05739	Canola	cytosol	13.57	58.82
Bra029197.1-P	Field mustard	cytosol	24.61	58.26
Bra028248.1-P	Field mustard	cytosol	60.47	57.99
CDX94184	Canola	cytosol, endoplasmic reticulum	15.5	56.74
AT5G10880.1	Thale cress	cytosol	33.14	55.34
Bra008444.1-P	Field mustard	cytosol	16.09	53.9
CDY33873	Canola	cytosol	12.6	53.72
CDY67326	Canola	cytosol	15.5	53.69
CDX74456	Canola	cytosol	34.88	53.57
Bra037949.1-P	Field mustard	mitochondrion	15.12	53.06
Bra037950.1-P	Field mustard	cytosol	12.21	52.5
CDY30241	Canola	cytosol	34.5	51.45
VIT_16s0050g00960.t01	Wine grape	cytosol	37.21	42.86
KRH33484	Soybean	plastid	28.68	39.05

Protein Annotations

KEGG:00970+6.1.1.15	EntrezGene:100253683	wikigene:100253683	MapMan:17.2.17	Gene3D:3.30.110.30	Gene3D:3.30.930.10
Gene3D:3.40.50.800	InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	ProteinID:CBI37058	ProteinID:CBI37058.3	UniProt:D7U2U2
EMBL:FN596502	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004827
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006433	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009506	GO:GO:0009987	GO:GO:0016020	GO:GO:0017101
GO:GO:0019538	InterPro:IPR006195	InterPro:IPR017449	InterPro:IPR036621	EntrezGene:LOC100253683	wikigene:LOC100253683
HAMAP:MF_01571	PFAM:PF00587	PFAM:PF03129	PFAM:PF09180	PRINTS:PR01046	PFscan:PS50862
PANTHER:PTHR43382	PANTHER:PTHR43382:SF2	InterPro:Pro-tRNA-ligase_IIa	InterPro:Pro-tRNA-ligase_IIa_arc-type	InterPro:Pro-tRNA_ligase_II_C	InterPro:Pro-tRNA_synth_II
InterPro:ProRS_core_arch_euk	SMART:SM00946	SUPFAM:SSF52954	SUPFAM:SSF55681	SUPFAM:SSF64586	TIGR:TC56236
TIGR:TC65900	TIGR:TC67571	TIGRFAMs:TIGR00408	UniParc:UPI0001983A2C	ArrayExpress:VIT_07s0005g02620	EnsemblPlantsGene:VIT_07s0005g02620
EnsemblPlants:VIT_07s0005g02620.t01	unigene:Vvi.7776	RefSeq:XP_002281375	RefSeq:XP_002281375.1	RefSeq:XP_010652337.1	InterPro:aa-tRNA-synt_IIb
InterPro:aa-tRNA-synth_II	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:-:4938231..4945398

Molecular Weight (calculated)

58727.3 Da

IEP (calculated)

7.389

GRAVY (calculated)

-0.467

Length

516 amino acids

Sequence
(BLAST)

001: MASGEGKKSG EGKKANANAK GGGKKKEVKK ETGLGLSYKK EENFGEWYSE VCVNGEMIEY YDISGCYILR PWTMAVWETM QTFFDAEIKK MKIKNCYFPL
101: FVSPGVLQKE KDHIEGFAPE VAWVTKSGQS DLEVPIAIRP TSETVMYPYY SKWIRGHRDL PLRLNQWCNV VRWEFSHPTP FIRSREFLWQ EGHTAFATKE
201: EADKEVLEIL ELYRRIYEEY LAIPVIKGKK SEMEKFAGGF YTTSVEAFIP NTGRGIQGAT SHCLGQNFAK MFDITFENEK GEKAMVWQNS WAYSTRTIGV
301: MVMVHGDDKG LVMPPKVASV QIIVVPVPFK DADTQAIFDA CDATVNTLNE AGFRAEADLR DNYSPGWKYS HWEMKGVPLR IEIGPKDLAN KQARAVRRDN
401: SAKIDIPIVN LVEQVKDMLD NIQQNLFDVA KQKRDACIKT VRTWDEFIEA LGQKKMILAP WCDEMEVEKD VKARTKGETG AAKTLCAPFD QPDLEGVNCF
501: VTGKPAKKWS YWGRSY

Best Arabidopsis Sequence Match ( AT3G62120.2 )
(BLAST)

001: MADPSEQKEK VVKEKKEKVK KEKVVKEKVA KASSSGQKKK DVKKETGLGL SVKKDENFGE WYSEVCKQDM IEYYDISGCY ILRPWSMAIW EIMQIFFDAE
101: IKKMKVKNCY FPLFVSPGVL EKEKDHIEGF APEVAWVTKS GKSDLEVPIA IRPTSETVMY PYYSKWIRGH RDLPLKLNQW CNVVRWEFSN PTPFIRSREF
201: LWQEGHTAFA TKAEADEEVL QILELYRRIY EEYLAVPVVK GMKSENEKFA GGLYTTSVEA FIPNTGRGVQ GATSHCLGQN FAKMFEINFE NEKAETEMVW
301: QNSWAYSTRT IGVMIMTHGD DKGLVLPPKV ASVQVVVIPV PYKDANTQGI YDACTATASA LCEAGIRAEE DLRDNYSPGW KYSDWEMKGV PLRIEIGPRD
401: LENDQVRTVR RDNGVKEDIP RGSLVEHVKE LLEKIQQNMY EVAKQKREAC VQEVKTWDEF IKALNEKKLI LAPWCDEEEV ERDVKARTKG ETGAAKTLCS
501: PFDQPELPEG TLCFASGKPA KKWTYWGRSY

Arabidopsis Description

Proline--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9M1R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.