Factsheet for VIT_12s0028g02240.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g05140.t01
VIT_01s0011g06410.t01
VIT_01s0113g00420.t01
VIT_01s0113g00470.t01
VIT_02s0012g02460.t01
VIT_03s0038g00350.t01
VIT_04s0008g00180.t01
VIT_04s0023g00730.t01
VIT_05s0029g00020.t01
VIT_05s0049g00160.t01
VIT_05s0049g00180.t01
VIT_05s0062g00240.t01
VIT_05s0062g00250.t01
VIT_05s0062g00480.t01
VIT_05s0062g00610.t01
VIT_05s0077g01860.t01
VIT_06s0004g05310.t01
VIT_06s0004g05320.t01
VIT_06s0004g05330.t01
VIT_06s0004g05360.t01
VIT_06s0004g05370.t01
VIT_06s0004g05380.t01
VIT_06s0004g05390.t01
VIT_06s0004g05400.t01
VIT_06s0004g05430.t01
VIT_06s0004g05440.t01
VIT_06s0004g05450.t01
VIT_06s0004g08230.t01
VIT_06s0080g00870.t01
VIT_07s0005g02620.t01
VIT_07s0005g06490.t01
VIT_08s0007g05790.t01
VIT_09s0002g05710.t01
VIT_12s0028g03560.t01
VIT_13s0019g03860.t01
VIT_13s0064g01220.t01
VIT_13s0064g01390.t01
VIT_13s0067g02190.t01
VIT_14s0083g00460.t01
VIT_15s0021g00760.t01
VIT_18s0001g14270.t01
VIT_18s0072g00170.t01
VIT_18s0076g00350.t01
VIT_18s0122g00960.t01
VIT_19s0014g01000.t01
VIT_19s0093g00560.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42580.1	VIT_01s0113g00470.t01	AT1G26650.1	19000166
AT2G42580.1	VIT_18s0122g00960.t01	AT1G42970.1	19000166
AT2G42580.1	VIT_19s0014g01000.t01	AT1G53400.1	19000166
AT2G42580.1	VIT_01s0113g00420.t01	AT1G69420.1	19000166
AT2G42580.1	VIT_13s0064g01390.t01	AT1G74050.1	19000166
AT2G42580.1	VIT_18s0001g14270.t01	AT1G75750.1	19000166
AT2G42580.1	VIT_18s0076g00350.t01	AT1G76920.1	19000166
AT2G42580.1	VIT_09s0002g05710.t01	AT1G80300.1	19000166
AT2G42580.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166
AT2G42580.1	VIT_12s0028g03560.t01	AT2G20670.1	19000166
AT2G42580.1	VIT_06s0080g00870.t01	AT2G27330.1	19000166
AT2G42580.1	VIT_06s0004g05310.t01	AT2G29340.1	19000166
AT2G42580.1	VIT_06s0004g05320.t01	AT2G29340.1	19000166
AT2G42580.1	VIT_06s0004g05330.t01	AT2G29340.1	19000166
AT2G42580.1	VIT_06s0004g05360.t01	AT2G29340.1	19000166
AT2G42580.1	VIT_06s0004g05370.t01	AT2G29340.1	19000166
AT2G42580.1	VIT_06s0004g05380.t01	AT2G29340.1	19000166
AT2G42580.1	VIT_06s0004g05390.t01	AT2G29340.1	19000166
AT2G42580.1	VIT_06s0004g05400.t01	AT2G29340.1	19000166
AT2G42580.1	VIT_06s0004g05430.t01	AT2G29340.1	19000166
AT2G42580.1	VIT_06s0004g05440.t01	AT2G29340.1	19000166
AT2G42580.1	VIT_06s0004g05450.t01	AT2G29340.1	19000166
AT2G42580.1	VIT_06s0004g08230.t01	AT2G30520.1	19000166
AT2G42580.1	VIT_08s0007g05790.t01	AT2G41410.1	19000166
AT2G42580.1	VIT_04s0023g00730.t01	AT3G02740.1	19000166
AT2G42580.1	VIT_13s0067g02190.t01	AT3G10980.1	19000166
AT2G42580.1	VIT_13s0064g01220.t01	AT3G12630.1	19000166
AT2G42580.1	VIT_19s0093g00560.t01	AT3G14400.1	19000166
AT2G42580.1	VIT_05s0077g01860.t01	AT3G16770.1	19000166
AT2G42580.1	VIT_05s0029g00020.t01	AT3G24830.1	19000166
AT2G42580.1	VIT_07s0005g06490.t01	AT3G24830.1	19000166
AT2G42580.1	VIT_15s0021g00760.t01	AT3G24830.1	19000166
AT2G42580.1	VIT_01s0011g05140.t01	AT3G26450.1	19000166
AT2G42580.1	VIT_13s0019g03860.t01	AT3G52300.1	19000166
AT2G42580.1	VIT_07s0005g02620.t01	AT3G62120.1	19000166
AT2G42580.1	VIT_05s0062g00240.t01	AT4G14130.1	19000166
AT2G42580.1	VIT_05s0062g00250.t01	AT4G14130.1	19000166
AT2G42580.1	VIT_05s0062g00480.t01	AT4G14130.1	19000166
AT2G42580.1	VIT_05s0062g00610.t01	AT4G14130.1	19000166
AT2G42580.1	VIT_05s0049g00160.t01	AT4G14440.1	19000166
AT2G42580.1	VIT_05s0049g00180.t01	AT4G14440.1	19000166
AT2G42580.1	VIT_01s0011g05140.t01	AT4G23670.1	19000166
AT2G42580.1	VIT_03s0038g00350.t01	AT4G39050.1	21798944
AT2G42580.1	VIT_02s0012g02460.t01	AT5G11670.1	19000166
AT2G42580.1	VIT_04s0008g00180.t01	AT5G11670.1	19000166
AT2G42580.1	VIT_14s0083g00460.t01	AT5G38530.1	19000166
AT2G42580.1	VIT_18s0072g00170.t01	AT5G42440.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g09830.t01	Wine grape	cytosol	32.82	88.26
KRH22291	Soybean	plastid	54.51	66.27
VIT_19s0014g01470.t01	Wine grape	cytosol	62.68	64.21
CDY61202	Canola	cytosol	58.03	61.4
Bra000267.1-P	Field mustard	cytosol	58.03	61.31
AT2G42580.1	Thale cress	cytosol	58.87	60.49
CDY42827	Canola	cytosol	56.76	60.06
AT3G58620.1	Thale cress	cytosol	57.32	59.68
GSMUA_Achr10P...	Banana	cytosol	56.06	59.67
CDY51514	Canola	cytosol	56.2	59.64
Bra007405.1-P	Field mustard	cytosol	56.48	59.58
CDY55390	Canola	cytosol	55.77	59.19
CDY49237	Canola	cytosol	55.49	59.07
CDX71941	Canola	cytosol	56.06	59.05
Bra004709.1-P	Field mustard	cytosol	54.23	58.6
GSMUA_Achr7P24480_001	Banana	cytosol	53.38	58.4
KRH27037	Soybean	nucleus	54.37	57.19
GSMUA_Achr4P08560_001	Banana	cytosol	54.37	56.35
Os01t0218200-00	Rice	plastid	53.1	56.1
TraesCS3B01G162100.1	Wheat	cytosol	52.68	55.65
TraesCS3A01G143000.1	Wheat	cytosol	52.39	55.36
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	39.15	55.27
TraesCS3D01G144600.1	Wheat	cytosol	52.54	55.26
Zm00001d008930_P003	Maize	cytosol	52.11	54.81
Zm00001d039362_P002	Maize	cytosol	51.55	54.63
HORVU1Hr1G093390.2	Barley	cytosol	51.41	54.23
EES02247	Sorghum	plastid	52.11	54.09
EES01073	Sorghum	cytosol	51.83	54.04
TraesCS1D01G437100.1	Wheat	nucleus	52.96	53.87
TraesCS3D01G231300.1	Wheat	cytosol, mitochondrion	51.97	53.63
TraesCS3A01G221800.1	Wheat	cytosol	51.97	53.63
Os05t0210600-01	Rice	cytosol	30.28	53.62
TraesCS1A01G427400.1	Wheat	cytosol	52.54	53.52
TraesCS3B01G251600.1	Wheat	cytosol, mitochondrion	51.83	53.49
TraesCS1B01G462300.1	Wheat	cytosol	52.25	53.46
Zm00001d044479_P001	Maize	cytosol	50.99	53.16
Zm00001d004494_P001	Maize	cytosol, mitochondrion	16.62	53.15
OQU78515	Sorghum	cytosol	52.39	53.14
GSMUA_Achr3P25160_001	Banana	cytosol	53.24	53.09
Os05t0587300-01	Rice	cytosol	41.27	52.79
HORVU3Hr1G054240.2	Barley	cytosol, mitochondrion	51.13	52.76
HORVU3Hr1G027650.2	Barley	mitochondrion	49.3	52.55
Zm00001d011352_P001	Maize	cytosol	49.72	51.84
GSMUA_AchrUn_...	Banana	cytosol	17.75	47.01
VIT_08s0007g01480.t01	Wine grape	cytosol	24.79	43.89
VIT_00s0304g00060.t01	Wine grape	plastid	36.62	36.47
VIT_18s0001g05380.t01	Wine grape	plastid	34.79	34.94
Zm00001d009724_P009	Maize	cytosol	49.58	32.93
VIT_11s0037g01020.t01	Wine grape	cytosol	6.76	19.67
Zm00001d006366_P001	Maize	cytosol	0.56	1.72
Zm00001d033961_P001	Maize	cytosol	0.56	1.72

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100247135	wikigene:100247135	MapMan:11.3.2.5	Gene3D:3.40.30.10	EMBL:AM436359
ProteinID:CAN62839	ProteinID:CAN62839.1	ProteinID:CCB47363	ProteinID:CCB47363.1	UniProt:F6H4Z5	EMBL:FN595235
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150
GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR013766
InterPro:IPR019734	EntrezGene:LOC100247135	wikigene:LOC100247135	PFAM:PF00085	PFAM:PF13174	PFAM:PF13432
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF374	SMART:SM00028	SUPFAM:SSF48452
SUPFAM:SSF52833	TIGR:TC52544	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	UniParc:UPI000198444A	ArrayExpress:VIT_12s0028g02240	EnsemblPlantsGene:VIT_12s0028g02240	EnsemblPlants:VIT_12s0028g02240.t01	unigene:Vvi.14974
unigene:Vvi.25644	RefSeq:XP_002276519	RefSeq:XP_002276519.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:-:3018560..3022589

Molecular Weight (calculated)

75471.0 Da

IEP (calculated)

8.331

GRAVY (calculated)

-0.333

Length

710 amino acids

Sequence
(BLAST)

001: MGIDSLSDRV RDTLSCESNK PDFRELDLGS PVSPLMTRGS GGGGGGSGGG GGGPAAMSSS SSSSGSVSGK TGGTQLVKRP DGSLNNYSGE LSASSETSPY
101: ASETLRSVAG TRNSRPGHRR SSSAGPPLIY SGASFVSSSN GGCSGGGASS ISSNPNANVL PSGNICPSGK ILKAGMPCRS SGRSDVLGSG TGHYGHGSIM
201: RGGAKLSSPR SIADVNMTGN IQFAGESVMV KRAMGSSDPE EVKKAGNELY RRGSFTEALS LYDRAISLSP DNAAYRSNRA AALTALGKLA EAVKECEEAV
301: RLDPGYGRAH QRLASLYLRL GQVENARRHL FLPGQPPDPS ELQKLLSLEK HLNRCADARK IGDWKSALRE CDAAIAGGAD SSPQLISCRA EALLKLHQIE
401: DADSCLSSIP KFEHYSPSCS TKFVCMIAEA YVLYVRAQVE MALGRFENAV AAAEKAGLID YSNVEVAKLL NNVKLVARAR ARGNELFSSG RFSEACSAYG
501: EGLKYDTSNS VLYCNRAVCW SKLGLWEKSV EDCNHALKIQ PNYTKALLRR AVSNGKLGQW AEAVKDYEVL RRELPGDIEV AESLSQAQAA LSKSWEEETH
601: SVKFGGEVEE VSGVDQFKAA ISSPGVSVVH FKVASNYQCG QVSPIMDKLC VQYPSIKFLK VDVEESPAVA KAESIKSVPT FKIYKNGGKV NEMICPSHQY
701: LEYSVRYYSL

Best Arabidopsis Sequence Match ( AT2G42580.1 )
(BLAST)

001: MSHSRRLSLE PAIDSITGRF RDLQRNDDDV NKPDFRELDL GSPVSTLMPR GSASSSAAAT PTSSSGSSGS ASGKPSVSSQ MAKRLDDAYK SHSGELSSPG
101: SGMPTTTRIL KPGHRRSSST GTPLIFSGSS FTSATSHTSP QGGGSGATSA VSPNTGVLPA GNICPSGRIL KTGMASRTSS RTETLCTGTG NYGHGNVVRS
201: GGGGGTSGKA VRVAENGENP EELKRMGNDM YRRGSFSEAL SLYDRAILIS PGNAAYRSNR AAALTALRRL GEAVKECLEA VRIDPSYSRA HQRLASLYLR
301: LGEAENARRH ICFSGQCPDQ ADLQRLQTLE KHLRRCWEAR KIGDWKTAIK ETDAAIANGA DSSPQLVACK AEAFLRLKQI EDSDFCVSCI PRLDHHYHSQ
401: PQVKLFGMVV EAYVLCIQAQ VDMALGRFEN AVVKAERAAM LDQTNPEVVS VLNNVKMVVR ARTRGNELFS SGRFSEACVA YGDGLKQDDS NSVLYCNRAA
501: CWYKLGLWEK SVEDCNHALK SQPSYIKALL RRAASYGKLG RWEDAVKDYE FLRRELPGDS EVAESLERAK TVLMNRSQES KSLGFNNEVE AVSTLDKFKK
601: SVALPGVSVF HFKSSSNRQC EEISPFINTL CLRYPLVHFF MVDVEESMAL AKAESIRKVP TFKMYKNGDK VKEMVCPSHQ FLEDSIKHFL L

Arabidopsis Description

TTL3Inactive TPR repeat-containing thioredoxin TTL3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.