Factsheet for VIT_06s0004g08230.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 3
plasma membrane 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0023g03170.t01
VIT_12s0028g02240.t01
VIT_18s0001g09830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30520.1	VIT_12s0028g02240.t01	AT2G42580.1	19000166
AT2G30520.1	VIT_18s0001g09830.t01	AT2G42580.1	19000166
AT2G30520.1	VIT_04s0023g03170.t01	AT5G66280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031245	Potato	cytosol	80.24	79.69
Solyc07g043130.2.1	Tomato	cytosol	79.72	79.17
KRG98106	Soybean	cytosol	74.48	74.35
CDY10743	Canola	cytosol	72.9	71.77
Bra018309.1-P	Field mustard	cytosol, plastid	74.13	71.74
KRH72843	Soybean	cytosol	72.73	71.72
CDY02075	Canola	cytosol	72.55	71.55
KRH17211	Soybean	cytosol	72.38	71.5
KRH30675	Soybean	cytosol	27.45	71.04
AT2G30520.1	Thale cress	cytosol	73.08	70.49
CDY23992	Canola	cytosol	68.88	69.73
CDX84827	Canola	cytosol	68.88	69.73
Bra022805.1-P	Field mustard	cytosol	69.93	69.57
KRH30676	Soybean	plastid	33.74	67.72
GSMUA_Achr11P...	Banana	cytosol, plastid	57.52	56.82
GSMUA_Achr5P29690_001	Banana	cytosol, plastid	59.27	56.5
TraesCS4B01G122300.1	Wheat	cytosol, plastid	47.73	47.81
TraesCS4A01G192900.1	Wheat	cytosol	46.85	47.69
TraesCS4D01G120400.1	Wheat	cytosol, plastid	47.38	47.46
Os12t0117400-01	Rice	plasma membrane	45.28	45.44
Zm00001d005051_P001	Maize	cytosol	45.8	45.41
HORVU4Hr1G023260.3	Barley	cytosol, plastid	47.38	43.29
OQU82741	Sorghum	plastid	45.1	42.86
Os11t0118300-01	Rice	cytosol, mitochondrion, nucleus	45.1	41.82
VIT_07s0129g00380.t01	Wine grape	cytosol	43.53	39.15
Zm00001d023314_P001	Maize	cytosol	42.83	38.4
VIT_07s0005g06300.t01	Wine grape	cytosol	39.16	36.36
VIT_08s0056g00610.t01	Wine grape	cytosol	36.71	34.88
KXG22914	Sorghum	plastid	42.13	33.75
VIT_07s0104g01440.t01	Wine grape	plastid	36.71	33.28
VIT_00s1395g00010.t01	Wine grape	cytosol	26.4	32.33
VIT_10s0003g04490.t01	Wine grape	cytosol	34.79	31.49
VIT_00s0207g00230.t01	Wine grape	cytosol	34.62	31.18
VIT_00s0665g00050.t01	Wine grape	cytosol	26.75	30.54
VIT_04s0008g06630.t01	Wine grape	cytosol	32.17	29.68
VIT_08s0040g01800.t01	Wine grape	cytosol	32.34	29.65
VIT_13s0019g04420.t01	Wine grape	cytosol	31.82	29.4
VIT_03s0038g00270.t01	Wine grape	cytosol	34.62	29.38
VIT_07s0129g00250.t01	Wine grape	cytosol	31.47	28.62
VIT_03s0091g00680.t01	Wine grape	cytosol	29.9	27.4
VIT_01s0137g00820.t01	Wine grape	cytosol, golgi, nucleus	30.07	27.3
VIT_06s0061g01140.t01	Wine grape	cytosol	26.92	26.55
VIT_00s0194g00080.t01	Wine grape	cytosol	25.87	24.96

Protein Annotations

EntrezGene:100257120	wikigene:100257120	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	ProteinID:CCB43390
ProteinID:CCB43390.1	UniProt:F6GU74	EMBL:FN594951	GO:GO:0003674	GO:GO:0004871	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628
GO:GO:0009638	GO:GO:0009987	InterPro:IPR000210	InterPro:IPR027356	EntrezGene:LOC100257120	wikigene:LOC100257120
InterPro:NPH3_dom	PFAM:PF00651	PFAM:PF03000	PFscan:PS50097	PFscan:PS51649	PANTHER:PTHR32370
PANTHER:PTHR32370:SF17	InterPro:RPT2	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SUPFAM:SSF54695	TIGR:TC60344
UniParc:UPI00015C7FBD	ArrayExpress:VIT_06s0004g08230	EnsemblPlantsGene:VIT_06s0004g08230	EnsemblPlants:VIT_06s0004g08230.t01	unigene:Vvi.3189	RefSeq:XP_002264896
RefSeq:XP_002264896.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:9015601..9017926

Molecular Weight (calculated)

63721.6 Da

IEP (calculated)

7.279

GRAVY (calculated)

-0.209

Length

572 amino acids

Sequence
(BLAST)

001: MAASLKGNNR RSLAMERTGQ WVFSQEIPTD VVVEVGEANF SLHKFMLVAK SNYIRKLIME SKEADLTNID LSDIPGGPEI FEKAAKFCYG VNFEITVHNV
101: AALRCAAEYL QMTDKYCDGN LSGRTEDFLK QVALTSLSGA VVVLKSCEDL LPKAEELKIV QRCVDVASTK ACNEANFPSR SPPNWWTEEL SILDIGFFEK
201: IIAAMKLRGA KSLTVASALI TYTERTLRDL VRDHTGNGIR SSDTEDSNLR SRQRELLEAI VVLLPSERAA LPINFLCCLL RSAIFLKVAH TCKNELEKRI
301: STILEHVTVD DLLVLSFTYD GERLFDLDSV RRIISGFVEK EKSVAVFNGG DFQEVCSTAM QRVAKTVDAY LGEIAAHGEL SICKFNGIAN LVPKDARKVD
401: DDLYRAIDIF LKAHPNLDEI EREKVCSVMD PLKLSYEARV HASQNKRLPV QIVLHALYYD QLKLRSGADD AHDAMSTRSH LQADVSLVRE NEALRSELMK
501: MKMYISDIQK NSSAGGGKGL GGGSKKPTFF SSMSKTLGKL NPFRHGSKDT SNIDDETAVD VTKPRRRRFS IS

Best Arabidopsis Sequence Match ( AT2G30520.1 )
(BLAST)

001: MATEGKNPIN MNSMSSSLAR TGQWVFSQDI PTDVVVEVGE ANFSLHKFML VAKSNYIRKL IMESKDSDVT RINLSDIPGG PEIFEKAAKF CYGVNFEITV
101: QNVAALHCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAIVVLKSC EILLPISRDL GIVRRCVDVV GAKACNEAMF PCRTPPNWWT EELCILDVDF
201: FSDVVSSMKQ RGVKPSSLAS AIITYTEKSL RDLVRDHSGR GVKYSDPGDN ESDERSQQRD LVQSIVSLLP SDKGLFPVNF LCSLLRCAVF LDTSLTCKNE
301: LEKRISVVLE HVSVDDLLIP SFTYDGERLL DLDSVRRIIS AFVEKEKNVG VFNGGDFNRG VCSVSLQRVA KTVDSYLAEI ATYGDLTISK FNAIANLVPK
401: SARKSDDDLY RAIDIFLKAH PNLDEIEREK VCSSMDPLKL SYDARLHASQ NKRLPVNIVL HALYYDQLKL RSGVAEQEER AVVVLPEALK TRSQLQADTT
501: LAKENEALRS ELMKMKMYVS DMQKNKNGAG ASSSNSSSLV SSKKSKHTFF SSVSKKLGKL NPFKNGSKDT SHIDEDLGGV DITKPRRRRF SIS

Arabidopsis Description

RPT2Root phototropism protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q682S0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.