CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22291
KRH27037
KRH28781
KRH76673

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30520.1	KRH22291	AT2G42580.1	19000166
AT2G30520.1	KRH27037	AT2G42580.1	19000166
AT2G30520.1	KRH28781	AT5G66280.1	21798944
AT2G30520.1	KRH76673	AT5G66280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30675	Soybean	cytosol	34.55	89.59
KRH30676	Soybean	plastid	41.36	83.16
VIT_06s0004g08230.t01	Wine grape	mitochondrion	74.35	74.48
KRH17211	Soybean	cytosol	74.52	73.75
KRH72843	Soybean	cytosol	74.52	73.62
PGSC0003DMT400031245	Potato	cytosol	73.47	73.09
Solyc07g043130.2.1	Tomato	cytosol	73.12	72.74
Bra018309.1-P	Field mustard	cytosol, plastid	68.41	66.33
AT2G30520.1	Thale cress	cytosol	68.41	66.1
CDY10743	Canola	cytosol	67.02	66.09
CDY02075	Canola	cytosol	66.84	66.03
CDX84827	Canola	cytosol	63.7	64.6
Bra022805.1-P	Field mustard	cytosol	64.75	64.52
CDY23992	Canola	cytosol	63.53	64.42
GSMUA_Achr11P...	Banana	cytosol, plastid	54.97	54.4
GSMUA_Achr5P29690_001	Banana	cytosol, plastid	55.85	53.33
TraesCS4A01G192900.1	Wheat	cytosol	46.07	46.98
TraesCS4B01G122300.1	Wheat	cytosol, plastid	46.07	46.23
TraesCS4D01G120400.1	Wheat	cytosol, plastid	45.72	45.88
Zm00001d005051_P001	Maize	cytosol	44.68	44.37
Os12t0117400-01	Rice	plasma membrane	43.98	44.21
HORVU4Hr1G023260.3	Barley	cytosol, plastid	45.38	41.53
OQU82741	Sorghum	plastid	43.28	41.2
Os11t0118300-01	Rice	cytosol, mitochondrion, nucleus	44.15	41.0
KRH58066	Soybean	cytosol	40.31	39.15
KRH77099	Soybean	cytosol	42.06	39.0
KRH04469	Soybean	cytosol	39.44	38.77
KRH28386	Soybean	cytosol	41.88	38.1
Zm00001d023314_P001	Maize	cytosol	42.41	38.09
KRH66064	Soybean	extracellular	36.47	34.09
KXG22914	Sorghum	plastid	42.06	33.75
KRH00498	Soybean	cytosol, plastid	35.78	33.72
KRH40661	Soybean	plastid	35.43	33.39
KRG96392	Soybean	plastid	35.08	32.01
KRH68133	Soybean	cytosol, plastid	34.9	31.8
KRH31912	Soybean	cytosol	34.38	31.37
KRG99570	Soybean	cytosol, endoplasmic reticulum, nucleus	36.82	31.31
KRH71541	Soybean	plastid	34.38	31.27
KRH28552	Soybean	cytosol	30.72	29.73
KRH32482	Soybean	cytosol	30.19	29.37
KRH19874	Soybean	cytosol	30.02	29.2
KRH12771	Soybean	cytosol	32.64	29.08
KRH08351	Soybean	cytosol	32.81	29.01
KRH23618	Soybean	cytosol	25.48	28.85
KRH37734	Soybean	cytosol	32.29	28.77
KRH21111	Soybean	cytosol	30.54	28.64
KRH76914	Soybean	cytosol	25.48	28.63
KRH34860	Soybean	cytosol	30.19	27.99
KRG91918	Soybean	cytosol	29.84	27.71
KRH10586	Soybean	cytosol	32.46	27.68
KRH69999	Soybean	endoplasmic reticulum	32.81	27.65
KRH15648	Soybean	cytosol	29.49	27.48
KRH21782	Soybean	cytosol	32.46	27.47
KRH05372	Soybean	cytosol	29.32	27.27
KRH42114	Soybean	cytosol	31.94	27.23
KRH52322	Soybean	cytosol	28.97	27.17
KRH22745	Soybean	cytosol	29.84	27.01
KRH43181	Soybean	cytosol	29.32	26.84
KRH35678	Soybean	cytosol	29.14	26.76
KRH58085	Soybean	cytosol	29.14	26.76
KRH04439	Soybean	cytosol	29.32	26.71
KRH58082	Soybean	cytosol	29.14	26.59
KRG91101	Soybean	mitochondrion	29.14	26.51
KRH59336	Soybean	cytosol	29.14	26.51
KRH04442	Soybean	cytosol	28.97	26.35
KRG92834	Soybean	cytosol	25.83	26.19
KRH74516	Soybean	cytosol	27.92	26.02
KRH61660	Soybean	cytosol	28.62	25.99
KRH26561	Soybean	cytosol	28.8	25.98
KRG99441	Soybean	cytosol	28.62	25.95
KRH69640	Soybean	cytosol	28.62	25.79
KRH33962	Soybean	cytosol	25.31	25.66
KRH45579	Soybean	nucleus	27.92	25.24
KRH49804	Soybean	endoplasmic reticulum, nucleus, plasma membrane, plastid	32.29	24.77
KRH01932	Soybean	cytosol	24.78	24.27
KRH51214	Soybean	cytosol	24.43	23.65
KRH11633	Soybean	cytosol	24.26	23.05
KRH36642	Soybean	cytosol	23.56	22.54
KRH62777	Soybean	cytosol	11.52	20.95
KRG90163	Soybean	cytosol	16.75	20.0

Protein Annotations

EntrezGene:100782043	Gene3D:3.30.710.10	MapMan:35.1	EMBL:ACUP02010844	InterPro:BTB/POZ_dom	ncoils:Coil
EnsemblPlantsGene:GLYMA_18G050800	GO:GO:0003674	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009638
GO:GO:0009987	UniProt:I1MZN6	InterPro:IPR000210	InterPro:IPR027356	EnsemblPlants:KRG98106	ProteinID:KRG98106
ProteinID:KRG98106.1	InterPro:NPH3_dom	PFAM:PF00651	PFAM:PF03000	PFscan:PS50097	PFscan:PS51649
PANTHER:PTHR32370	PANTHER:PTHR32370:SF17	InterPro:RPT2	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SUPFAM:SSF54695
UniParc:UPI000233E151	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:4401052..4403896

Molecular Weight (calculated)

64837.8 Da

IEP (calculated)

7.458

GRAVY (calculated)

-0.262

Length

573 amino acids

Sequence
(BLAST)

001: MATPNNRLSL AMERTGQWVF SQDIPTDVIV EVGETIFSLH KFMLVAKSNY IRKLILESNE GELTRIYLSD IPGGPSIFEK TAKFCYGVNF EITVHNVAVL
101: RCAAEFLQMT DQYCENNLAG RTEEFLTQVA FFTLTGAVTV LKSCRHLLPY ADEINVVKRC VEAVSAKACS EANFPSRSPP NWWTEELAVL DIDFFGNVIV
201: AMKQRGAKPL TVAAAIITYT ERALRDLVRD HTGNGIRYTD PGDSDSRSKQ RKLLEAIVDL FPSEKAAFPI HFLCCLLRCA IYLRASATCK TELEKRISEI
301: LEHVTVDNLL VLSFTYDGER LFDLESVRRI ISEFVEKEKG NAVFTTAEFK EPCSATMQRV ARTVDTYLSK IAAYGDLSIS KFNGIAILVP KNARKVDDDL
401: YRAVDIYLKA HPKLDEIERE KVCSVMDPLK LSYEARVHAS QNKRLPVQIV LHALYYDQLR LRSGAEERDV EPEKNQLQMD VSLVRENEEL RTELMKMKMY
501: ISDLQNKNTN NDANPQVHGT TSSATPKKAT FFSSVSKTLG KLNPFRNGSK DTTHLEDASV DLTKPRRRRF SMS

Best Arabidopsis Sequence Match ( AT2G30520.1 )
(BLAST)

001: MATEGKNPIN MNSMSSSLAR TGQWVFSQDI PTDVVVEVGE ANFSLHKFML VAKSNYIRKL IMESKDSDVT RINLSDIPGG PEIFEKAAKF CYGVNFEITV
101: QNVAALHCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAIVVLKSC EILLPISRDL GIVRRCVDVV GAKACNEAMF PCRTPPNWWT EELCILDVDF
201: FSDVVSSMKQ RGVKPSSLAS AIITYTEKSL RDLVRDHSGR GVKYSDPGDN ESDERSQQRD LVQSIVSLLP SDKGLFPVNF LCSLLRCAVF LDTSLTCKNE
301: LEKRISVVLE HVSVDDLLIP SFTYDGERLL DLDSVRRIIS AFVEKEKNVG VFNGGDFNRG VCSVSLQRVA KTVDSYLAEI ATYGDLTISK FNAIANLVPK
401: SARKSDDDLY RAIDIFLKAH PNLDEIEREK VCSSMDPLKL SYDARLHASQ NKRLPVNIVL HALYYDQLKL RSGVAEQEER AVVVLPEALK TRSQLQADTT
501: LAKENEALRS ELMKMKMYVS DMQKNKNGAG ASSSNSSSLV SSKKSKHTFF SSVSKKLGKL NPFKNGSKDT SHIDEDLGGV DITKPRRRRF SIS

Arabidopsis Description

RPT2Root phototropism protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q682S0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.