Factsheet for Bra022805.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000267.1-P
Bra004709.1-P
Bra012067.1-P
Bra031811.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30520.1	Bra000267.1-P	AT2G42580.1	19000166
AT2G30520.1	Bra004709.1-P	AT2G42580.1	19000166
AT2G30520.1	Bra012067.1-P	AT5G66280.1	21798944
AT2G30520.1	Bra031811.1-P	AT5G66280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84827	Canola	cytosol	98.26	100.0
Bra018309.1-P	Field mustard	cytosol, plastid	89.57	87.14
AT2G30520.1	Thale cress	cytosol	86.61	83.98
VIT_06s0004g08230.t01	Wine grape	mitochondrion	69.57	69.93
PGSC0003DMT400031245	Potato	cytosol	68.0	67.88
Solyc07g043130.2.1	Tomato	cytosol	67.3	67.19
KRG98106	Soybean	cytosol	64.52	64.75
KRH30675	Soybean	cytosol	24.52	63.8
KRH72843	Soybean	cytosol	62.96	62.41
KRH17211	Soybean	cytosol	61.57	61.14
KRH30676	Soybean	plastid	29.22	58.95
GSMUA_Achr5P29690_001	Banana	cytosol, plastid	53.04	50.83
GSMUA_Achr11P...	Banana	cytosol, plastid	50.96	50.6
TraesCS4D01G120400.1	Wheat	cytosol, plastid	45.74	46.06
TraesCS4B01G122300.1	Wheat	cytosol, plastid	45.57	45.88
TraesCS4A01G192900.1	Wheat	cytosol	44.17	45.2
Zm00001d005051_P001	Maize	cytosol	44.52	44.37
Os12t0117400-01	Rice	plasma membrane	42.78	43.16
HORVU4Hr1G023260.3	Barley	cytosol, plastid	45.22	41.53
OQU82741	Sorghum	plastid	42.78	40.86
Os11t0118300-01	Rice	cytosol, mitochondrion, nucleus	42.78	39.87
Bra012158.1-P	Field mustard	cytosol	40.35	38.6
Zm00001d023314_P001	Maize	cytosol	41.39	37.3
Bra031830.1-P	Field mustard	cytosol	35.48	36.96
Bra037460.1-P	Field mustard	cytosol	37.74	35.0
Bra036043.1-P	Field mustard	cytosol	32.87	34.49
KXG22914	Sorghum	plastid	42.43	34.17
Bra033365.1-P	Field mustard	cytosol	36.0	32.86
Bra032401.1-P	Field mustard	cytosol	34.43	32.62
Bra001349.1-P	Field mustard	plastid	32.7	32.25
Bra029894.1-P	Field mustard	plastid	36.0	32.04
Bra032187.1-P	Field mustard	cytosol	26.61	31.94
Bra032564.1-P	Field mustard	cytosol, plastid	35.3	31.82
Bra005737.1-P	Field mustard	cytosol	30.61	29.93
Bra012166.1-P	Field mustard	cytosol	29.22	29.84
Bra037846.1-P	Field mustard	cytosol	27.13	29.66
Bra036858.1-P	Field mustard	cytosol	29.39	29.44
Bra008815.1-P	Field mustard	cytosol	30.61	29.0
Bra010771.1-P	Field mustard	cytosol, mitochondrion, nucleus	33.04	28.96
Bra011301.1-P	Field mustard	cytosol	28.52	28.42
Bra032391.1-P	Field mustard	cytosol, mitochondrion, nucleus	31.83	27.69
Bra017837.1-P	Field mustard	cytosol	27.83	27.68
Bra024285.1-P	Field mustard	cytosol	34.61	27.45
Bra010603.1-P	Field mustard	cytosol	27.3	27.3
Bra025440.1-P	Field mustard	cytosol	27.13	27.23
Bra023423.1-P	Field mustard	cytosol	25.91	26.99
Bra039820.1-P	Field mustard	cytosol	29.39	26.95
Bra012082.1-P	Field mustard	cytosol	31.3	26.91
Bra037773.1-P	Field mustard	cytosol	33.57	26.19
Bra004064.1-P	Field mustard	cytosol	28.35	25.91
Bra009047.1-P	Field mustard	cytosol	28.0	25.56
Bra024915.1-P	Field mustard	cytosol	24.17	24.78
Bra025208.1-P	Field mustard	cytosol	24.52	24.56
Bra037606.1-P	Field mustard	cytosol	26.96	24.18
Bra010770.1-P	Field mustard	plasma membrane	0.0	0.0

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	EnsemblPlantsGene:Bra022805	EnsemblPlants:Bra022805.1	EnsemblPlants:Bra022805.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009638
GO:GO:0009987	InterPro:IPR000210	InterPro:IPR027356	UniProt:M4E205	InterPro:NPH3_dom	PFAM:PF00651
PFAM:PF03000	PFscan:PS50097	PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF17	InterPro:RPT2
InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SUPFAM:SSF54695	UniParc:UPI0002540241	SEG:seg	:

Description

AT2G30520 (E=9e-179) RPT2 | RPT2 (ROOT PHOTOTROPISM 2); protein binding

Coordinates

chrA03:-:7153862..7156519

Molecular Weight (calculated)

63977.7 Da

IEP (calculated)

7.170

GRAVY (calculated)

-0.222

Length

575 amino acids

Sequence
(BLAST)

001: MATEGKTPIN INTMSSSLQR TGQLGFSQDI PTDVVVEVGE ANFSLHKFML VAKSNYIRKL IMESKDSDVT RIDLSDIPGG AEMFEKAAKF CYGVSFEITV
101: QNVAALQCAA EFLQMTDKYC DNNLAGRIQD FLSQVALSSL SGAIVVLKSC EILLPISRDL GIVRRCVDVV GTKACNEAMF PCRSPPNWWT EELCILNIDF
201: FSDVLASMKQ RGLKPSSLAS AIITYTERSL RDLVRDHSGR GVKFSDPENN DSEERTQQRH LVESIVSLLP SDKGLFPINF LCSLLRCAVF LNTSLASKNE
301: VEKRISAVLE HVTVDDLLVP SFTYDGERLL DLDSVRRIIS AFVEKEKSKK GLCSVSLQRV AKNVDSYLAE IATCLELTVS KFNAIANLVP KSARKSEDDL
401: YRAVDIFLKA HPSLGEIERE KVCSLMDPLK LSYDARLHAS QNKRLPVNIV LHTLYYDQLK LRSEVEDKEG TPVIVPEGLG TRDSSLAKEN EDLRSELMKM
501: KMYVSDLQNN VAAGASSSNA PSNKKNSKHT FFSSVSKKLG KLNPFRHGSK DTSNIDEDLD GVDITKPRRR RFSIS

Best Arabidopsis Sequence Match ( AT2G30520.1 )
(BLAST)

001: MATEGKNPIN MNSMSSSLAR TGQWVFSQDI PTDVVVEVGE ANFSLHKFML VAKSNYIRKL IMESKDSDVT RINLSDIPGG PEIFEKAAKF CYGVNFEITV
101: QNVAALHCAA EFLQMTDKYC DNNLAGRTQD FLSQVALSSL SGAIVVLKSC EILLPISRDL GIVRRCVDVV GAKACNEAMF PCRTPPNWWT EELCILDVDF
201: FSDVVSSMKQ RGVKPSSLAS AIITYTEKSL RDLVRDHSGR GVKYSDPGDN ESDERSQQRD LVQSIVSLLP SDKGLFPVNF LCSLLRCAVF LDTSLTCKNE
301: LEKRISVVLE HVSVDDLLIP SFTYDGERLL DLDSVRRIIS AFVEKEKNVG VFNGGDFNRG VCSVSLQRVA KTVDSYLAEI ATYGDLTISK FNAIANLVPK
401: SARKSDDDLY RAIDIFLKAH PNLDEIEREK VCSSMDPLKL SYDARLHASQ NKRLPVNIVL HALYYDQLKL RSGVAEQEER AVVVLPEALK TRSQLQADTT
501: LAKENEALRS ELMKMKMYVS DMQKNKNGAG ASSSNSSSLV SSKKSKHTFF SSVSKKLGKL NPFKNGSKDT SHIDEDLGGV DITKPRRRRF SIS

Arabidopsis Description

RPT2Root phototropism protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q682S0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.