Factsheet for Bra012082.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012095.1-P
Bra030520.1-P
Bra032556.1-P
Bra041171.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66560.1	Bra030520.1-P	AT1G03140.1	21798944
AT5G66560.1	Bra032556.1-P	AT1G03140.1	21798944
AT5G66560.1	Bra041171.1-P	AT1G03140.1	21798944
AT5G66560.1	Bra012095.1-P	AT5G66720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45241	Canola	cytosol	88.79	99.33
AT5G66560.1	Thale cress	cytosol	87.0	87.13
Bra036858.1-P	Field mustard	cytosol	56.2	65.51
VIT_00s0207g00230.t01	Wine grape	cytosol	60.69	63.94
Solyc02g090070.2.1	Tomato	nucleus	60.99	62.67
KRH08351	Soybean	cytosol	60.24	62.19
PGSC0003DMT400026008	Potato	cytosol	60.99	61.91
KRH28552	Soybean	cytosol	54.26	61.32
KRH69999	Soybean	endoplasmic reticulum	60.84	59.85
KRH76914	Soybean	cytosol	43.05	56.47
GSMUA_Achr9P26440_001	Banana	cytosol	48.28	55.5
GSMUA_Achr8P04840_001	Banana	cytosol	47.23	53.74
OQU91026	Sorghum	cytosol, nucleus, plastid	43.05	48.16
EER93390	Sorghum	cytosol	48.58	48.08
HORVU5Hr1G093880.1	Barley	cytosol	29.75	47.84
Os03t0767600-01	Rice	cytosol	48.73	47.73
Zm00001d033941_P001	Maize	mitochondrion, plastid	44.84	47.54
TraesCS5B01G408200.1	Wheat	cytosol	47.53	47.18
TraesCS5D01G413400.1	Wheat	cytosol	47.23	46.95
TraesCS5A01G403400.1	Wheat	cytosol	47.38	46.89
TraesCS5D01G389200.2	Wheat	cytosol, plastid	45.14	46.68
TraesCS5A01G379300.1	Wheat	cytosol, plastid	45.14	46.39
TraesCS5B01G383100.1	Wheat	plastid	45.29	46.33
HORVU5Hr1G098170.1	Barley	cytosol, mitochondrion	47.09	45.99
HORVU5Hr1G093850.15	Barley	mitochondrion	44.69	45.58
Os03t0738900-00	Rice	nucleus, plasma membrane, plastid	44.39	45.27
Zm00001d013182_P003	Maize	cytosol, mitochondrion	47.53	45.23
TraesCS1B01G298700.1	Wheat	cytosol, plastid	27.95	45.17
TraesCS2D01G507400.1	Wheat	nucleus	36.32	44.18
Bra032391.1-P	Field mustard	cytosol, mitochondrion, nucleus	43.35	43.87
Bra010771.1-P	Field mustard	cytosol, mitochondrion, nucleus	42.75	43.6
Bra025440.1-P	Field mustard	cytosol	34.83	40.66
Bra005737.1-P	Field mustard	cytosol	35.73	40.65
Bra008815.1-P	Field mustard	cytosol	35.13	38.72
Bra037606.1-P	Field mustard	cytosol	35.73	37.29
Bra012166.1-P	Field mustard	cytosol	28.85	34.28
Bra037460.1-P	Field mustard	cytosol	31.09	33.55
Bra037846.1-P	Field mustard	cytosol	26.31	33.46
Bra023423.1-P	Field mustard	cytosol	27.5	33.33
Bra001349.1-P	Field mustard	plastid	29.0	33.28
Bra012158.1-P	Field mustard	cytosol	29.75	33.11
Bra032401.1-P	Field mustard	cytosol	29.6	32.62
Bra032187.1-P	Field mustard	cytosol	23.17	32.36
Bra017837.1-P	Field mustard	cytosol	27.95	32.35
Bra010603.1-P	Field mustard	cytosol	27.65	32.17
Bra033365.1-P	Field mustard	cytosol	30.04	31.9
Bra024285.1-P	Field mustard	cytosol	34.08	31.45
Bra022805.1-P	Field mustard	cytosol	26.91	31.3
Bra039820.1-P	Field mustard	cytosol	29.3	31.26
Bra032564.1-P	Field mustard	cytosol, plastid	29.75	31.19
Bra037773.1-P	Field mustard	cytosol	34.23	31.07
Bra031830.1-P	Field mustard	cytosol	25.56	30.98
Bra036043.1-P	Field mustard	cytosol	25.26	30.84
Bra018309.1-P	Field mustard	cytosol, plastid	26.91	30.46
Bra004064.1-P	Field mustard	cytosol	28.55	30.37
Bra025208.1-P	Field mustard	cytosol	25.86	30.14
Bra011301.1-P	Field mustard	cytosol	25.56	29.64
Bra024915.1-P	Field mustard	cytosol	24.36	29.06
Bra029894.1-P	Field mustard	plastid	27.95	28.95
Bra009047.1-P	Field mustard	cytosol	26.91	28.57
GSMUA_Achr3P25690_001	Banana	nucleus	43.05	24.12
Bra010770.1-P	Field mustard	plasma membrane	0.0	0.0

Protein Annotations

MapMan:35.1	InterPro:BTB/POZ_dom	EnsemblPlantsGene:Bra012082	EnsemblPlants:Bra012082.1	EnsemblPlants:Bra012082.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0016020	InterPro:IPR000210	InterPro:IPR027356	UniProt:M4D6H3	InterPro:NPH3_dom	PFAM:PF03000
PFscan:PS50097	PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF8	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225
SUPFAM:SSF54695	UniParc:UPI00025417DC	SEG:seg	:	:	:

Description

AT5G66560 (E=0.0) | phototropic-responsive NPH3 family protein

Coordinates

chrA07:-:10133217..10135511

Molecular Weight (calculated)

74459.9 Da

IEP (calculated)

5.083

GRAVY (calculated)

-0.419

Length

669 amino acids

Sequence
(BLAST)

001: MASSEKSTSK GQAWFCTTGL PSDIEIEVDD MTFHLHKFPL MSKSRKLHRL ITEQETRSFS SVNPQTSTAL TVVVAESDKK GKGHEIEDEE KEEEENEQET
101: EENGFPHIKL EDFPGSSESF EMVAKFCYGV KIDLSASSAV PLRCAAEHLE MTEEYSPDNL ISKTERFLSH SVYKSLRESI KALQACESVS PLAESLGVTE
201: QCVESIVSRA SSADPSLFGW PVNDGGGGPD LSLIPGGASS KSAKKQNRDN TNTELWFEDL AQLSLPIFRT VILSMRSEDL SSDVIESCLI SYAKKHIPGI
301: LRSNRKPSSS SSTAASENEQ REILETITSN LPLDKSSISA TTRFLFGLLR TAIILNASET CRDLLERKIG SQLERASLDD LLVPSYSYLN ETLYDVDLVE
401: RILSHFLDSL EERSSTALVE ADGRSPSLML VGKLIDGFLA EIASDANLKS EKFYNLAISL PDQARLYDDG LYRAVDVYLK AHPWVTEEEK EKICGVMDCQ
501: KLTLEACTHA AQNERLPLRT VVQVLFFEQL QLRHAIAGTL LAAQSPSPSQ STEPRPSATR NLTIAEVVNG NETRGEEEVD AGKWKKTVRE NQVLRLDMDT
601: IRTRVHRLER ECSNMKKVIA KIDKVGSPAT TVTDRPRSWS ITKKFGCKFK TQVCDSQEAT VVDHRSRRV

Best Arabidopsis Sequence Match ( AT5G66560.1 )
(BLAST)

001: MASEKSTSKG QAWFCTTGLP SDIEIEVDDM TFHLHKFPLM SKSRKLHRLI TEQETRSSSS MALITVIDPK VEETDKKGKG HEIEDDKEEE EVEEQEIEEN
101: GYPHIKLEDF PGSSESFEMV AKFCYGVKMD LSASTVVPLR CAAEHLEMTE EYSPDNLISK TERFLSHSVY KSLRESIKAL KACESVSPLA GSLGITEQCI
201: DSIVSRASSA DPSLFGWPVN DGGGRGNISA TDLQLIPGGA AKSRKKPSRD SNMELWFEDL TQLSLPIFKT VILSMRSGDL SSDIIESCLI CYAKKHIPGI
301: LRSNRKPPSS SSTAVSENEQ RELLETITSN LPLDKSSISS TTRFLFGLLR TAIILNAAEI CRDLLERKIG SQLERATLDD LLVPSYSYLN ETLYDVDLVE
401: RILGHFLDTL EQSNTAIVEV DGKSPSLMLV GKLIDGFLAE IASDANLKSD KFYNLAISLP DQARLYDDGL YRAVDVYLKA HPWVSEAERE KICGVMDCQK
501: LTLEACTHAA QNERLPLRAV VQVLFFEQLQ LRHAIAGTLL AAQSPSTSQS TEPRPSAAIR NLTITEEDGD EAEGERQVDA GKWKKTVREN QVLRLDMDTM
601: RTRVHRLERE CSNMKKVIAK IDKEGSSPAT TTDRPRSWSI TKKFGCKFKT QVCDSHEATM VDHRSRRS

Arabidopsis Description

BTB/POZ domain-containing protein At5g66560 [Source:UniProtKB/Swiss-Prot;Acc:Q94A73]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.