Factsheet for VIT_00s0207g00230.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0023g01400.t01
VIT_07s0151g01010.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66560.1	VIT_07s0151g01010.t01	AT1G03140.1	21798944
AT5G66560.1	VIT_04s0023g01400.t01	AT5G66720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g090070.2.1	Tomato	nucleus	72.76	70.97
PGSC0003DMT400026008	Potato	cytosol	72.76	70.11
KRH08351	Soybean	cytosol	67.56	66.2
KRH28552	Soybean	cytosol	60.94	65.37
CDY45241	Canola	cytosol	60.79	64.55
CDY30765	Canola	cytosol	63.62	63.72
KRH69999	Soybean	endoplasmic reticulum	67.56	63.09
AT5G66560.1	Thale cress	cytosol	65.51	62.28
GSMUA_Achr9P26440_001	Banana	cytosol	56.54	61.68
KRH76914	Soybean	cytosol	48.82	60.78
Bra012082.1-P	Field mustard	cytosol	63.94	60.69
GSMUA_Achr8P04840_001	Banana	cytosol	54.49	58.84
AT3G50840.1	Thale cress	cytosol	52.13	58.17
CDX77951	Canola	cytosol	50.08	58.03
CDX73781	Canola	cytosol	48.66	56.7
Bra036858.1-P	Field mustard	cytosol	51.18	56.62
OQU91026	Sorghum	cytosol, nucleus, plastid	50.24	53.34
HORVU5Hr1G093880.1	Barley	cytosol	34.65	52.88
Zm00001d033941_P001	Maize	mitochondrion, plastid	51.5	51.82
TraesCS5D01G389200.2	Wheat	cytosol, plastid	52.6	51.62
TraesCS5B01G383100.1	Wheat	plastid	52.44	50.92
TraesCS5A01G379300.1	Wheat	cytosol, plastid	52.13	50.84
EER93390	Sorghum	cytosol	54.02	50.74
Os03t0738900-00	Rice	nucleus, plasma membrane, plastid	52.13	50.46
HORVU5Hr1G093850.15	Barley	mitochondrion	52.13	50.46
TraesCS5A01G403400.1	Wheat	cytosol	53.23	50.0
TraesCS5B01G408200.1	Wheat	cytosol	53.07	50.0
TraesCS5D01G413400.1	Wheat	cytosol	52.91	49.93
Os03t0767600-01	Rice	cytosol	53.54	49.78
VIT_10s0003g04490.t01	Wine grape	cytosol	48.82	49.05
TraesCS2D01G507400.1	Wheat	nucleus	42.36	48.91
TraesCS1B01G298700.1	Wheat	cytosol, plastid	31.81	48.79
HORVU5Hr1G098170.1	Barley	cytosol, mitochondrion	52.6	48.76
Zm00001d013182_P003	Maize	cytosol, mitochondrion	52.91	47.8
VIT_13s0019g04420.t01	Wine grape	cytosol	41.42	42.49
VIT_08s0040g01800.t01	Wine grape	cytosol	40.63	41.35
VIT_00s1395g00010.t01	Wine grape	cytosol	28.66	38.97
VIT_06s0061g01140.t01	Wine grape	cytosol	35.12	38.45
VIT_00s0665g00050.t01	Wine grape	cytosol	28.66	36.33
VIT_07s0005g06300.t01	Wine grape	cytosol	34.96	36.04
VIT_08s0056g00610.t01	Wine grape	cytosol	33.39	35.22
VIT_06s0004g08230.t01	Wine grape	mitochondrion	31.18	34.62
VIT_03s0038g00270.t01	Wine grape	cytosol	36.22	34.12
VIT_07s0104g01440.t01	Wine grape	plastid	33.54	33.76
VIT_07s0129g00380.t01	Wine grape	cytosol	33.54	33.49
VIT_01s0137g00820.t01	Wine grape	cytosol, golgi, nucleus	32.76	33.02
VIT_04s0008g06630.t01	Wine grape	cytosol	31.81	32.58
VIT_07s0129g00250.t01	Wine grape	cytosol	31.97	32.27
VIT_03s0091g00680.t01	Wine grape	cytosol	31.18	31.73
VIT_00s0194g00080.t01	Wine grape	cytosol	27.24	29.17
GSMUA_Achr3P25690_001	Banana	nucleus	48.98	26.05

Protein Annotations

EntrezGene:100254086	wikigene:100254086	Gene3D:3.30.710.10	MapMan:35.1	EMBL:AM472566	InterPro:BTB/POZ_dom
ProteinID:CAN61829	ProteinID:CAN61829.1	ProteinID:CCB60997	ProteinID:CCB60997.1	ncoils:Coil	UniProt:F6I230
EMBL:FN596526	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR027356
EntrezGene:LOC100254086	wikigene:LOC100254086	InterPro:NPH3_dom	PFAM:PF00651	PFAM:PF03000	PFscan:PS50097
PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF8	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SUPFAM:SSF54695
TIGR:TC64245	UniParc:UPI0001985FF0	ArrayExpress:VIT_00s0207g00230	EnsemblPlantsGene:VIT_00s0207g00230	EnsemblPlants:VIT_00s0207g00230.t01	unigene:Vvi.19215
RefSeq:XP_002272552	RefSeq:XP_002272552.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrUn:-:12529247..12531917

Molecular Weight (calculated)

70747.0 Da

IEP (calculated)

4.872

GRAVY (calculated)

-0.350

Length

635 amino acids

Sequence
(BLAST)

001: MAAEKASGRG QAWFCTTGLP SDIVIEVDDM TFHLHKFPLM SKSRKLHELI TEQETNPTRN QSNFSAEEEE YDEIEQEQYC HISLPDFPGG SETLETAAKF
101: CYGVKIELSA SNVAPLRCAG EFLEMTEEYS EDNLISRTER YLSQSVLISV KESIKTLKSC EGLMPLAETL DIPQRCIEAI AERALSADPS LFGWPVNDGR
201: GSSNPLLWNG IETSVRRKGT SRTTTSDSWL EELALLSLPL FKRLILAMRA RDLSPDVIES CLMYYAKKYI PGISRSNRKP PSSSVVSETE QRELLEAIIT
301: NLPSENSSRS SIATRFLFGL LRTANILNAS EASRAALERK IGSQLEQATL DDLLIPSYSY LNETLYDVDC VERILGYFLD GLEAGIEGEI GDGSIRPPAM
401: MLVGKLIDGY LSEIASDANL KPDKFYELAI ALPENARLFD DGLYRAVDVY LKAHPWVAEE EREKICGVMD CQKLTLEACT HAAQNERLPL RAVVQVLFFE
501: QLQLRHAITG SILAAEAAPP DSGRPSNLQL EQEGESAVGA AQDVSTWRAA VRENQVLRLD MDSMRSRVHE LERECSTMKK AIEKIDQLGP SGGGGGWRGS
601: LTKRFGCKFK TQVCDSHEPS VVETRKARHQ HQHQH

Best Arabidopsis Sequence Match ( AT5G66560.1 )
(BLAST)

001: MASEKSTSKG QAWFCTTGLP SDIEIEVDDM TFHLHKFPLM SKSRKLHRLI TEQETRSSSS MALITVIDPK VEETDKKGKG HEIEDDKEEE EVEEQEIEEN
101: GYPHIKLEDF PGSSESFEMV AKFCYGVKMD LSASTVVPLR CAAEHLEMTE EYSPDNLISK TERFLSHSVY KSLRESIKAL KACESVSPLA GSLGITEQCI
201: DSIVSRASSA DPSLFGWPVN DGGGRGNISA TDLQLIPGGA AKSRKKPSRD SNMELWFEDL TQLSLPIFKT VILSMRSGDL SSDIIESCLI CYAKKHIPGI
301: LRSNRKPPSS SSTAVSENEQ RELLETITSN LPLDKSSISS TTRFLFGLLR TAIILNAAEI CRDLLERKIG SQLERATLDD LLVPSYSYLN ETLYDVDLVE
401: RILGHFLDTL EQSNTAIVEV DGKSPSLMLV GKLIDGFLAE IASDANLKSD KFYNLAISLP DQARLYDDGL YRAVDVYLKA HPWVSEAERE KICGVMDCQK
501: LTLEACTHAA QNERLPLRAV VQVLFFEQLQ LRHAIAGTLL AAQSPSTSQS TEPRPSAAIR NLTITEEDGD EAEGERQVDA GKWKKTVREN QVLRLDMDTM
601: RTRVHRLERE CSNMKKVIAK IDKEGSSPAT TTDRPRSWSI TKKFGCKFKT QVCDSHEATM VDHRSRRS

Arabidopsis Description

BTB/POZ domain-containing protein At5g66560 [Source:UniProtKB/Swiss-Prot;Acc:Q94A73]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.