Factsheet for VIT_00s1395g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0665g00050.t01	Wine grape	cytosol	95.29	88.82
Solyc05g051580.2.1	Tomato	cytosol	68.31	51.12
KRH59336	Soybean	cytosol	68.74	50.95
KRH43181	Soybean	cytosol	67.88	50.64
PGSC0003DMT400018688	Potato	cytosol	67.88	50.64
AT5G10250.2	Thale cress	cytosol	62.74	47.11
CDX69851	Canola	cytosol	62.74	46.51
Bra009047.1-P	Field mustard	cytosol	62.31	46.19
CDX96986	Canola	cytosol	61.03	45.53
VIT_03s0038g00270.t01	Wine grape	cytosol	52.89	36.65
VIT_04s0008g06630.t01	Wine grape	cytosol	40.04	30.16
VIT_03s0091g00680.t01	Wine grape	cytosol	38.97	29.17
VIT_07s0005g06300.t01	Wine grape	cytosol	38.33	29.06
VIT_01s0137g00820.t01	Wine grape	cytosol, golgi, nucleus	38.97	28.89
VIT_07s0129g00250.t01	Wine grape	cytosol	38.76	28.78
VIT_00s0207g00230.t01	Wine grape	cytosol	38.97	28.66
VIT_08s0056g00610.t01	Wine grape	cytosol	36.83	28.57
VIT_10s0003g04490.t01	Wine grape	cytosol	38.33	28.32
VIT_07s0129g00380.t01	Wine grape	cytosol	38.33	28.14
VIT_00s0194g00080.t01	Wine grape	cytosol	34.9	27.49
VIT_13s0019g04420.t01	Wine grape	cytosol	35.97	27.14
VIT_07s0104g01440.t01	Wine grape	plastid	36.19	26.78
VIT_08s0040g01800.t01	Wine grape	cytosol	35.76	26.76
VIT_06s0004g08230.t01	Wine grape	mitochondrion	32.33	26.4
VIT_06s0061g01140.t01	Wine grape	cytosol	31.91	25.69

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	ProteinID:CCB62951	ProteinID:CCB62951.1	UniProt:F6I7N2
EMBL:FN596853	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000210	InterPro:IPR027356
InterPro:NPH3_dom	PFAM:PF00651	PFAM:PF03000	PFscan:PS50097	PFscan:PS51649	PANTHER:PTHR32370
PANTHER:PTHR32370:SF37	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SUPFAM:SSF54695	UniParc:UPI0002108F13	ArrayExpress:VIT_00s1395g00010
EnsemblPlantsGene:VIT_00s1395g00010	EnsemblPlants:VIT_00s1395g00010.t01	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:38989210..38992446

Molecular Weight (calculated)

53111.9 Da

IEP (calculated)

5.923

GRAVY (calculated)

-0.203

Length

467 amino acids

Sequence
(BLAST)

001: FVTSQVPTDL TIQVQDITFY AHKYPLVSRC GYISQIELQP SISNLGYDLK LENFPGGSET FEIILKFCYG LPVDLNPNNA ASLRCASEFL EMTEELDEGN
101: LISKTEAFLT FVVLSSWRDS ITVLKSCENL SPWAENLQII RRCCDSIAWK ASQDNSTTGE TISEEGWWFD DVATLRIDHF TRIMTAARAK GLKPEIIGSC
201: IMHYAEKWLP GMDVALEGPR AFGYGKNELQ LSILSGRRQE GGVGHNKELK MIIESLVSIL PPEKEAVSCK FLLWMLKMSV VYSATQVLVS ELEKRVGMVL
301: QDANVNDLLI PTYRNGDQGK LVNSSEELTM HDIDAVQRIV EYFLMHEQQQ PHQHKSSKLN VSKLLDNYLA EIARDPNLSI TKFHVLAETL PENARTCHDG
401: LYRAIDTYLK THPSLSEHDR KRLCKVMDYE KLSLDACMHA AQNDRLPLRI VIQVKFLNNS RLKFFMY

Best Arabidopsis Sequence Match ( AT5G10250.2 )
(BLAST)

001: MNSVSAAERL KSFGDAGPVC NKSIIFPSRV VTLANSFEKK DRSWYVKSQI PTDLSIQVND ITFKAHKFPL ISKCGYISSI ELKPSTSENG YHLKLENFPG
101: GADTFETILK FCYNLPLDLN PLNVAPLRCA SEYLYMTEEF EAGNLISKTE AFITFVVLAS WRDTLTVLRS CTNLSPWAEN LQIVRRCCDL LAWKACNDNN
201: IPEDVVDRNE RCLYNDIATL DIDHFMRVIT TMKARRAKPQ ITGKIIMKYA DNFLPVINDD LEGIKGYGLG KNELQFSVNR GRMEESNSLG CQEHKETIES
301: LVSVLPPQSG AVSCHFLLRM LKTSIVYSAS PALISDLEKR VGMALEDANV CDLLIPNFKN EEQQERVSSP EVYTIYNVDV VHRIFEFFLM HEQQQVLGKP
401: SISKLLDNYL AEIAKDPYLP ITKFQVLAEM LPENAWKCHD GLYRAIDMFL KTHPSLSDHD RRRLCKTMNC EKLSLDACLH AAQNDRLPLR TIVQINTQVL
501: FSEQVKMRMM MQDKLPEKEE ENSGGREDKR MSRDNEIIKT LKEELENVKK KMSELQSDYN ELQQEYERLS SKQKSSHNWG LRWQKVKKSF QTKREDEETR
601: ERTRRRSSTG QRTSFRRRMS MS

Arabidopsis Description

DOT3Phototropic-responsive NPH3 family protein [Source:TAIR;Acc:AT5G10250]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.