CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69851	Canola	cytosol	87.7	87.14
AT5G10250.2	Thale cress	cytosol	76.84	77.33
VIT_00s1395g00010.t01	Wine grape	cytosol	45.53	61.03
VIT_00s0665g00050.t01	Wine grape	cytosol	48.08	60.08
KRH43181	Soybean	cytosol	54.95	54.95
KRH59336	Soybean	cytosol	54.47	54.13
Solyc05g051580.2.1	Tomato	cytosol	50.64	50.8
PGSC0003DMT400018688	Potato	cytosol	50.48	50.48
CDX84515	Canola	cytosol	39.46	34.02
CDY18715	Canola	cytosol	39.14	33.84
CDX81221	Canola	cytosol	39.14	33.56
CDY68489	Canola	cytosol, plastid	23.48	32.74
CDY72506	Canola	cytosol	6.55	32.28
CDY10395	Canola	cytosol	27.96	32.23
CDX70320	Canola	cytosol	29.39	32.17
CDY72257	Canola	cytosol	25.88	32.02
CDY72267	Canola	cytosol	25.88	32.02
CDX85639	Canola	cytosol	28.91	31.64
CDX80858	Canola	cytosol	29.07	30.95
CDX83620	Canola	cytosol	26.68	30.53
CDY38923	Canola	cytosol	23.16	30.46
CDY11245	Canola	cytosol	29.07	30.43
CDX89539	Canola	cytosol	23.16	30.27
CDY30615	Canola	cytosol	24.12	30.26
CDY57361	Canola	cytosol	23.96	30.06
CDY37857	Canola	cytosol	28.75	30.0
CDX81314	Canola	cytosol	24.92	29.66
CDY18140	Canola	cytosol	29.71	29.52
CDX89922	Canola	cytosol	29.71	29.52
CDY12841	Canola	cytosol	28.43	29.52
CDY50369	Canola	cytosol	24.12	29.43
CDY45241	Canola	cytosol	28.11	29.43
CDY37449	Canola	cytosol	22.84	29.42
CDX84827	Canola	cytosol	26.52	29.38
CDX77951	Canola	cytosol	25.72	29.38
CDX73781	Canola	cytosol	25.56	29.36
CDX81462	Canola	cytosol	28.11	29.19
CDX69627	Canola	cytosol	28.27	29.16
CDY10743	Canola	cytosol	27.0	29.09
CDY12846	Canola	cytosol	26.2	29.03
CDY37223	Canola	cytosol	27.96	29.02
CDX68790	Canola	cytosol	26.52	29.02
CDY13635	Canola	cytosol	26.52	28.92
CDY57436	Canola	cytosol	27.8	28.86
CDY23992	Canola	cytosol	26.04	28.85
CDY09812	Canola	cytosol	27.96	28.78
CDY02075	Canola	cytosol	26.52	28.62
CDY18660	Canola	cytosol	24.12	28.6
CDY69095	Canola	cytosol	25.56	28.52
CDY09561	Canola	cytosol	27.48	28.48
CDY30765	Canola	cytosol	28.75	28.39
CDX85365	Canola	cytosol	28.11	28.39
CDX86278	Canola	cytosol	28.11	28.39
CDY32492	Canola	cytosol	28.91	28.37
CDY02305	Canola	cytosol	27.48	28.34
CDY22422	Canola	cytosol	25.72	28.0
CDX75198	Canola	cytosol	25.72	27.9
CDY44035	Canola	cytosol	25.56	27.83
CDX73937	Canola	plastid	25.88	27.74
CDY09586	Canola	cytosol	28.91	27.59
CDY52208	Canola	plastid	28.43	27.55
CDY27653	Canola	cytosol	27.16	27.51
CDY00659	Canola	plastid	25.56	27.35
CDX72639	Canola	cytosol	25.24	27.34
CDX90249	Canola	cytosol, mitochondrion, nucleus	27.48	27.26
CDY02293	Canola	cytosol, mitochondrion, nucleus	28.59	27.16
CDY29566	Canola	cytosol	24.6	26.64
CDX99692	Canola	cytosol, mitochondrion, nucleus	27.32	26.51
CDY17704	Canola	cytosol	23.0	25.67
CDX77798	Canola	cytosol	23.0	25.67
CDX83030	Canola	plastid	21.41	25.05
CDY29723	Canola	cytosol	26.52	23.82
CDY20341	Canola	cytosol	26.2	23.1
CDY12056	Canola	plasma membrane	28.11	10.9

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	EnsemblPlants:CDX96986	ProteinID:CDX96986	ProteinID:CDX96986.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00103934001	InterPro:IPR000210
InterPro:IPR027356	InterPro:NPH3_dom	PFAM:PF03000	PFscan:PS50097	PFscan:PS51649	PANTHER:PTHR32370
PANTHER:PTHR32370:SF37	InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	UniPathway:UPA00143	UniParc:UPI0004EDC197	SEG:seg

Description

BnaC09g46390D

Coordinates

chrLK031897:-:58401..60912

Molecular Weight (calculated)

71937.8 Da

IEP (calculated)

6.576

GRAVY (calculated)

-0.562

Length

626 amino acids

Sequence
(BLAST)

001: MDSPSASQLK SSEDDADKVC NRSIVVPHRV VALANRFEKK DRSWYVKSKI PNDLSIQVDD ITFQAHKFPL ITKCGYISNT ELQRSASGNG YHLKLENFPG
101: GAETFETILK FCYGFPVDLN PLNVAALRCA SEYLYMTEEF QDGNLISKTD GFITFVVLAS WRDTLTVLRS CTSLSPWAEN LQIVRRCYDL LAWKACNDSY
201: DIPEDVENNE RSLYNGIANL QLDHFMRVVT SVNARRGKPE VIGRLIMKHA ENWLPLIDED MEGIRGYGSG NNEFQFSVER ERTEGSTLGC QEQKRTIESL
301: VSVLPTQPEA VVPCQFLLRL LKTAIVYSAS PALISDLEKR VGMALEDANV CDLLIPNFKN EDQQKGARSH EEYTIYNVDV VHRILEYFVM HEQQQQQEQQ
401: QVQGKPGITK LLDNYLAEIA KDPYLPITKF QVLAETLPEN AWKCHDGLYR AIDMFLKTHP SLSEHDRRRL CKTMNCEKLS LDACLHAAQN DRLPLRTIVQ
501: VLFSEQVKIR MMMMQDKQAA GTNEENPEGL EDKRTFRDSE IITLKGELEN VKRKLAELQD NYNELHQVYE KLNSSKQKST QNWGLRWEKI KKSLQIKREE
601: DEARDKPQRR SSTGPRTSLR RRMSMS

Best Arabidopsis Sequence Match ( AT5G10250.2 )
(BLAST)

001: MNSVSAAERL KSFGDAGPVC NKSIIFPSRV VTLANSFEKK DRSWYVKSQI PTDLSIQVND ITFKAHKFPL ISKCGYISSI ELKPSTSENG YHLKLENFPG
101: GADTFETILK FCYNLPLDLN PLNVAPLRCA SEYLYMTEEF EAGNLISKTE AFITFVVLAS WRDTLTVLRS CTNLSPWAEN LQIVRRCCDL LAWKACNDNN
201: IPEDVVDRNE RCLYNDIATL DIDHFMRVIT TMKARRAKPQ ITGKIIMKYA DNFLPVINDD LEGIKGYGLG KNELQFSVNR GRMEESNSLG CQEHKETIES
301: LVSVLPPQSG AVSCHFLLRM LKTSIVYSAS PALISDLEKR VGMALEDANV CDLLIPNFKN EEQQERVSSP EVYTIYNVDV VHRIFEFFLM HEQQQVLGKP
401: SISKLLDNYL AEIAKDPYLP ITKFQVLAEM LPENAWKCHD GLYRAIDMFL KTHPSLSDHD RRRLCKTMNC EKLSLDACLH AAQNDRLPLR TIVQINTQVL
501: FSEQVKMRMM MQDKLPEKEE ENSGGREDKR MSRDNEIIKT LKEELENVKK KMSELQSDYN ELQQEYERLS SKQKSSHNWG LRWQKVKKSF QTKREDEETR
601: ERTRRRSSTG QRTSFRRRMS MS

Arabidopsis Description

DOT3Phototropic-responsive NPH3 family protein [Source:TAIR;Acc:AT5G10250]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.