CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029894.1-P	Field mustard	plastid	99.25	82.2
CDY52208	Canola	plastid	98.13	81.27
AT2G47860.3	Thale cress	plastid	85.61	69.6
VIT_07s0104g01440.t01	Wine grape	plastid	64.49	54.68
KRG96392	Soybean	plastid	63.18	53.82
KRH71541	Soybean	plastid	63.36	53.81
KRH68133	Soybean	cytosol, plastid	62.99	53.58
KRH31912	Soybean	cytosol	62.8	53.5
Solyc09g074630.2.1	Tomato	cytosol	49.53	51.86
PGSC0003DMT400029528	Potato	cytosol	49.16	51.67
CDX89922	Canola	cytosol	60.0	50.95
CDY18140	Canola	cytosol	59.81	50.79
CDY32492	Canola	cytosol	58.88	49.37
GSMUA_Achr8P30170_001	Banana	plastid	50.84	48.75
GSMUA_Achr1P11260_001	Banana	plastid	51.78	48.34
Zm00001d047483_P002	Maize	plastid	55.14	45.6
TraesCS5D01G463700.1	Wheat	plastid	54.95	45.02
OQU92601	Sorghum	plastid	55.33	44.78
HORVU1Hr1G055870.1	Barley	plastid	55.33	44.51
TraesCS7A01G184200.2	Wheat	plastid	55.33	44.31
Os03t0347700-01	Rice	mitochondrion, plastid	54.39	43.37
TraesCS5B01G461900.4	Wheat	plastid	52.15	42.47
CDY37449	Canola	cytosol	38.5	42.39
CDY09561	Canola	cytosol	38.5	34.11
CDY02305	Canola	cytosol	38.13	33.61
CDX86278	Canola	cytosol	38.88	33.55
CDX73937	Canola	plastid	36.45	33.39
CDX85365	Canola	cytosol	38.69	33.39
CDY68489	Canola	cytosol, plastid	27.48	32.74
CDY00659	Canola	plastid	35.51	32.48
CDY12841	Canola	cytosol	36.45	32.34
CDY72506	Canola	cytosol	7.66	32.28
CDY57436	Canola	cytosol	36.26	32.17
CDY37857	Canola	cytosol	36.07	32.17
CDY30615	Canola	cytosol	27.85	29.86
CDY57361	Canola	cytosol	27.66	29.66
CDX84827	Canola	cytosol	30.47	28.85
CDY10743	Canola	cytosol	31.21	28.74
CDY23992	Canola	cytosol	30.28	28.67
CDY02075	Canola	cytosol	31.03	28.62
CDY10395	Canola	cytosol	27.1	26.7
CDY72267	Canola	cytosol	24.67	26.09
CDY72257	Canola	cytosol	24.67	26.09
CDX70320	Canola	cytosol	27.1	25.35
CDX80858	Canola	cytosol	27.66	25.17
CDX73781	Canola	cytosol	25.61	25.14
CDY11245	Canola	cytosol	27.85	24.92
CDY12846	Canola	cytosol	26.17	24.78
CDX90249	Canola	cytosol, mitochondrion, nucleus	29.16	24.72
CDX85639	Canola	cytosol	26.36	24.65
CDX77951	Canola	cytosol	25.23	24.64
CDX81314	Canola	cytosol	24.11	24.52
CDY18715	Canola	cytosol	33.08	24.45
CDX89539	Canola	cytosol	21.87	24.43
CDY29566	Canola	cytosol	26.36	24.39
CDX72639	Canola	cytosol	26.36	24.39
CDY44035	Canola	cytosol	26.17	24.35
CDY27653	Canola	cytosol	28.04	24.27
CDY18660	Canola	cytosol	23.93	24.24
CDX81221	Canola	cytosol	32.9	24.11
CDY69095	Canola	cytosol	25.23	24.06
CDX84515	Canola	cytosol	32.52	23.97
CDY38923	Canola	cytosol	21.31	23.95
CDX81462	Canola	cytosol	26.92	23.88
CDX69627	Canola	cytosol	26.92	23.72
CDY37223	Canola	cytosol	26.73	23.71
CDX68790	Canola	cytosol	25.23	23.6
CDX75198	Canola	cytosol	25.42	23.57
CDY09586	Canola	cytosol	28.79	23.48
CDX99692	Canola	cytosol, mitochondrion, nucleus	28.22	23.41
CDY02293	Canola	cytosol, mitochondrion, nucleus	28.79	23.37
CDY09812	Canola	cytosol	26.54	23.36
CDY22422	Canola	cytosol	25.05	23.3
CDY45241	Canola	cytosol	25.79	23.08
CDX83620	Canola	cytosol	22.99	22.49
CDX69851	Canola	cytosol	25.98	22.06
CDY13635	Canola	cytosol	23.36	21.78
CDY30765	Canola	cytosol	25.79	21.77
CDX96986	Canola	cytosol	25.05	21.41
CDY50369	Canola	cytosol	20.37	21.25
CDY29723	Canola	cytosol	24.67	18.94
CDY20341	Canola	cytosol	25.05	18.87
CDY17704	Canola	cytosol	19.63	18.72
CDX77798	Canola	cytosol	19.63	18.72
CDY12056	Canola	plasma membrane	29.16	9.67

Protein Annotations

Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	EnsemblPlants:CDX83030	ProteinID:CDX83030	ProteinID:CDX83030.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00138501001	InterPro:IPR000210
InterPro:IPR027356	InterPro:NPH3_dom	PFAM:PF00651	PFAM:PF03000	PFscan:PS50097	PFscan:PS51649
PANTHER:PTHR32370	PANTHER:PTHR32370:SF30	InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	UniPathway:UPA00143	UniParc:UPI0004EDCEDE
SEG:seg	:	:	:	:	:

Description

BnaA01g20300D

Coordinates

chrLK031831:+:787081..789531

Molecular Weight (calculated)

60461.8 Da

IEP (calculated)

9.570

GRAVY (calculated)

-0.384

Length

535 amino acids

Sequence
(BLAST)

001: MGVVTVPESK QSVSGKKAFR PSSSIRHTPQ WPVSDVTSDL TIEVGSASFS LHKFPLVSRS GRIRKLLLES KETKNTYHLN LPGVPGGSEA FELAAKFCYG
101: VVLQFTSANI ASLRCVAHYL EMTEELSEKN LEVRTEAYLK DSILNDISNS ITVLHSIEKL LPVAEEISLV GRLVNAIAVN ACKEQLVSGL LKLDQKFERL
201: APETTEKPSD WWGRSLLILK LDFFQRVVSA MKSKGLNHEI ISDILMSYAR KSLQIIREPS LVKGSVILDS DPQKKQRICD YEDDDDGDVV DESEMAMYDF
301: EGPESPKQSS IFKFIALAEL LPDHARVVCD CLYRAIDLFL KVHPNMKDSE RYRLCKTISC QKLSQDASSH AAQNERLPIQ IAVQVLFYEQ TRLKNTMTSG
401: SGACGSSQSQ FFLFPGQFPN RSGSGMASGA ISPRDNYASV RRENRELRLE VARMRMRLTD LEKDHVSMKR EFVKPSRRTR YGLFRKLSRG LNKLNAIMLR
501: FRRSQSIAGN GKHTEEKTNS EKRFMFQKRR CHSVS

Best Arabidopsis Sequence Match ( AT2G47860.5 )
(BLAST)

001: MTEDLSEKNL EARTEAYLKD SIFNDISNSI TVLHSCERLL PVAEEINLVG RLVNAIAVNA CKEQLASGLL KLDQSFSCGV PETAKPCDWW GRSLPILKLD
101: FFQRVLSAMK SKGLNHDIIS DILMSYARKS LQIIREPNLV KSDSDLQRKQ RIVLEAVVGL LPTQANKSSI PISFLSSLLK TAIGSGTSVS CRSDLERRIS
201: HLLDQAILED ILIPANIGAM YDTDSVQRIF SMFLNLDECE YRDDDDDEED AVDESEMAMY DFEGAESPKQ SSIFKVSKLM DSYLAEVALD SSLPPSKFIA
301: LAELLPDHAR VVCDGLYRAV DIFLKVHPHM KDSERYRLCK TVSCKKLSQD ASSHAAQNER LPVQIAVQVL FYEQTRLKNA MTSGGGTGGS NQSQFFLFPN
401: RSGSGMASGA ISPRDNYASV RRENRELRLE VARMRMRLTD LEKDHVSMKR DFVKPQSRRR RYGMLRKLSR GLNKLNAIVL RFRSSQSVAS SGKKHTEEKT
501: NSERRFMFQK RRCHSVS

Arabidopsis Description

Phototropic-responsive NPH3 family protein [Source:UniProtKB/TrEMBL;Acc:F4IM54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.