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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX92680
CDY03026
CDY03375
CDY09346
CDY11059
CDY12184
CDY17423
CDY34347
CDY45189
CDY60835
CDY62179

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G64330.1 CDY03026 AT2G02950.1 16777956
AT5G64330.1 CDY09346 AT2G02950.1 16777956
AT5G64330.1 CDY17423 AT2G02950.1 16777956
AT5G64330.1 CDY45189 AT2G02950.1 16777956
AT5G64330.1 CDY60835 AT2G02950.1 16777956
AT5G64330.1 CDY62179 AT2G02950.1 16777956
AT5G64330.1 CDX92680 AT4G25160.1 16777956
AT5G64330.1 CDY03375 AT4G25160.1 16777956
AT5G64330.1 CDY11059 AT4G25160.1 16777956
AT5G64330.1 CDY12184 AT4G25160.1 16777956
AT5G64330.1 CDY34347 AT4G25160.1 16777956
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY18715 Canola cytosol 96.03 96.82
CDX84515 Canola cytosol 89.18 89.67
AT5G64330.1 Thale cress cytosol 89.32 87.4
VIT_03s0038g00270.t01 Wine grape cytosol 71.23 77.15
KRH42114 Soybean cytosol 70.82 76.93
GSMUA_Achr3P20380_001 Banana cytosol 59.86 76.0
Solyc10g047530.1.1 Tomato cytosol 69.86 75.67
PGSC0003DMT400083737 Potato cytosol 68.08 75.42
Solyc01g105680.2.1 Tomato nucleus 69.04 75.34
KRH23618 Soybean cytosol 52.05 75.1
PGSC0003DMT400006173 Potato cytosol 69.45 75.0
KRH10586 Soybean cytosol 67.95 73.81
KRH21782 Soybean cytosol 67.81 73.12
KRH49804 Soybean endoplasmic reticulum, nucleus, plasma membrane, plastid 71.1 69.48
TraesCS6B01G117400.1 Wheat cytosol 62.6 61.92
HORVU6Hr1G015480.1 Barley cytosol 61.92 61.83
TraesCSU01G114000.1 Wheat cytosol 62.19 61.68
TraesCS6A01G085100.1 Wheat cytosol 61.64 61.56
Zm00001d016898_P001 Maize cytosol 61.37 59.81
Os02t0568200-00 Rice cytosol 62.19 59.58
EES07014 Sorghum nucleus 62.05 58.6
Zm00001d004440_P001 Maize cytosol 47.4 54.23
KXG25806 Sorghum cytosol 46.03 51.38
GSMUA_Achr1P21440_001 Banana cytosol 41.92 50.33
CDY72257 Canola cytosol 29.32 42.29
CDY72267 Canola cytosol 29.32 42.29
CDY68489 Canola cytosol, plastid 25.07 40.76
CDY38923 Canola cytosol 26.03 39.92
CDX89539 Canola cytosol 26.03 39.67
CDX96986 Canola cytosol 33.56 39.14
CDX90249 Canola cytosol, mitochondrion, nucleus 33.56 38.83
CDY10395 Canola cytosol 28.77 38.67
CDX69851 Canola cytosol 33.29 38.57
CDY22422 Canola cytosol 30.27 38.43
CDX70320 Canola cytosol 30.0 38.29
CDY44035 Canola cytosol 30.14 38.26
CDY09586 Canola cytosol 34.11 37.96
CDY02293 Canola cytosol, mitochondrion, nucleus 34.25 37.94
CDX72639 Canola cytosol 30.0 37.89
CDX81314 Canola cytosol 27.26 37.83
CDY12846 Canola cytosol 29.18 37.7
CDX85639 Canola cytosol 29.45 37.59
CDY18660 Canola cytosol 27.12 37.5
CDY29566 Canola cytosol 29.59 37.37
CDY69095 Canola cytosol 28.63 37.25
CDY50369 Canola cytosol 26.16 37.23
CDX80858 Canola cytosol 29.86 37.07
CDY27653 Canola cytosol 31.1 36.73
CDX73781 Canola cytosol 27.4 36.7
CDX81462 Canola cytosol 30.27 36.65
CDY11245 Canola cytosol 29.86 36.45
CDY45241 Canola cytosol 29.73 36.29
CDY37223 Canola cytosol 29.86 36.15
CDY37857 Canola cytosol 29.59 36.0
CDX77951 Canola cytosol 26.85 35.77
CDY09812 Canola cytosol 29.73 35.69
CDX99692 Canola cytosol, mitochondrion, nucleus 31.51 35.66
CDX69627 Canola cytosol 29.59 35.58
CDX68790 Canola cytosol 27.81 35.49
CDY57436 Canola cytosol 29.32 35.49
CDY30765 Canola cytosol 30.82 35.49
CDY12841 Canola cytosol 29.18 35.32
CDX75198 Canola cytosol 27.67 35.01
CDY30615 Canola cytosol 23.7 34.67
CDY57361 Canola cytosol 23.56 34.47
CDX83620 Canola cytosol 25.75 34.37
CDY10743 Canola cytosol 27.26 34.25
CDX86278 Canola cytosol 29.04 34.19
CDY23992 Canola cytosol 26.44 34.16
CDX84827 Canola cytosol 26.44 34.16
CDX73937 Canola plastid 27.26 34.08
CDX85365 Canola cytosol 28.9 34.03
CDY00659 Canola plastid 27.12 33.85
CDY02075 Canola cytosol 26.85 33.79
CDY37449 Canola cytosol 22.47 33.74
CDY09561 Canola cytosol 27.81 33.61
CDY17704 Canola cytosol 25.75 33.51
CDX77798 Canola cytosol 25.75 33.51
CDY18140 Canola cytosol 28.77 33.33
CDY02305 Canola cytosol 27.67 33.28
CDX89922 Canola cytosol 28.63 33.17
CDY52208 Canola plastid 29.32 33.13
CDY13635 Canola cytosol 25.89 32.93
CDX83030 Canola plastid 24.11 32.9
CDY32492 Canola cytosol 28.49 32.6
CDY29723 Canola cytosol 29.86 31.28
CDY20341 Canola cytosol 29.59 30.42
CDY72506 Canola cytosol 5.21 29.92
CDY12056 Canola plasma membrane 33.15 14.99
Protein Annotations
MapMan:19.2.2.8.2.2.1Gene3D:3.30.710.10GO:A0A078CVS0InterPro:BTB/POZ_domEnsemblPlants:CDX81221ProteinID:CDX81221
ProteinID:CDX81221.1ncoils:CoilGO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0006464
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016567GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00134688001
InterPro:IPR000210InterPro:IPR027356InterPro:NPH3-likeInterPro:NPH3_domPFAM:PF03000PFscan:PS50097
PFscan:PS51649PANTHER:PTHR32370PANTHER:PTHR32370:SF6InterPro:SKP1/BTB/POZ_sfSUPFAM:SSF54695UniPathway:UPA00143
UniParc:UPI0004EF0E88SEG:seg::::
Description
BnaC09g06320D
Coordinates
chrLK031824:+:179308..182998
Molecular Weight (calculated)
80991.5 Da
IEP (calculated)
8.308
GRAVY (calculated)
-0.403
Length
730 amino acids
Sequence
(BLAST)
001: MWESESDSGV VGGGGREYGN EVLSSNKHGS VRTDGFELRG QSWCVATDIS SDLLVKICDM NFHLHKYPLL SRSGKMNRLI YESPREPDPT ILILDDLPGG
101: PEAFELASKF CYGVPVDLTA TNISGLRCAA EYLEMTEDLE EGNLIFKTEA FLSYVVLSSW RDSILVLKSC EKLSPWAENL QIVRRCSESI AWKACSNPKG
201: IRWAYTGKSP SLSSSPKTTN NFASSSPKWN ETKDSSLYCS PSRNNNNNQT VPPDWWFEDV SILRIDHFVR VITAIKVKGM RFELLGAAIM HYARKWLPGV
301: FKEGAPAPST IGGGGDEMSV SCGSNSSGGS SGHDNWKGGL HMVLSGKPNA HQDSTAFLAG HVTSPKEQRM IVESLISIIP PQKDSVTCSF LLRLLRAASM
401: LKVAPALTTE LEKRVGMQFE QATLQDLLIK GETMYDVDLV QRLLEHFLVQ EQTEGSSPSR MSPYADAGVP RANSISGNNS QNAKMRVARL VDSYLTEVAR
501: DRNLPLTKFQ VLAEALPESA RTCDDGLYRA IDSYLKAHPT LSEHERKRLC RVMDCQKLSM DACMHAAQNE RLPLRVVVQV LFSEQVKISN ALANTSLKES
601: TTLGEAMGTT YQPMIPNRKT LIEATPQSFQ ARWAAAKKDI NTLKFEIETV KTKYVELQNE MEAMQRQFEK TGKVKTSTSS SSAWSSGWKK LSKFTKMTVP
701: ESPDVARGEQ AGGVNHQPAR KPRRWRNSIS
Best Arabidopsis Sequence Match ( AT5G64330.1 )
(BLAST)
001: MMWESESDGG VGVGGGGGRE YGDGVLSSNK HGGVKTDGFE LRGQSWFVAT DIPSDLLVKI GDMNFHLHKY PLLSRSGKMN RLIYESRDPD PTILILDDLP
101: GGPEAFELAS KFCYGVPVDL TATNISGLRC AAEYLEMTED LEEGNLIFKT EAFLSYVVLS SWRDSILVLK SCEKLSPWAE NLQIVRRCSE SIAWKACSNP
201: KGIRWAYTGK APSPSTTNFA GSSPRWNESK DSSFYCSPSR NTNSQPVPPD WWFEDVSILR IDHFVRVITA IKVKGMRFEL LGAVIMHYAG KWLPGLIKEG
301: GVAIAPAMSS AIGGGLGLGG DEMSISCGSN SSGGSSGPDW KGGLHMVLSA GKTNGHQDSV ACLAGLGISP KDQRMIVESL ISIIPPQKDS VTCSFLLRLL
401: RAANMLKVAP ALITELEKRV GMQFEQATLQ DLLIPGYNNK GETMYDVDLV QRLLEHFLVQ EQTEGSSPSR MSPSPSQSMY ADIPRGNNNN GGGGGGNNQN
501: AKMRVARLVD SYLTEVARDR NLPLTKFQVL AEALPESART CDDGLYRAID SYLKAHPTLS EHERKRLCRV MDCQKLSMDA CMHAAQNERL PLRVVVQVLF
601: SEQVKISNAL ANTSLKESTT LGEAMGTYQP MIPNRKTLIE ATPQSFQEGW AAAKKDINTL KFELETVKTK YVELQNEMEV MQRQFEKTGK VKNTPSSSAW
701: TSGWKKLSKL TKMSGQESHD ISSGGEQAGV DHPPPRKPRR WRNSIS
Arabidopsis Description
RPT3Root phototropism protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.