Factsheet for TraesCSU01G114000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G382700.4
TraesCS4A01G382900.1
TraesCS7A01G084400.4
TraesCS7D01G079400.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64330.1	TraesCS4A01G382700.4	AT4G25160.1	16777956
AT5G64330.1	TraesCS4A01G382900.1	AT4G25160.1	16777956
AT5G64330.1	TraesCS7A01G084400.4	AT4G25160.1	16777956
AT5G64330.1	TraesCS7D01G079400.2	AT4G25160.1	16777956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G085100.1	Wheat	cytosol	96.74	97.4
TraesCS6B01G117400.1	Wheat	cytosol	97.42	97.15
HORVU6Hr1G015480.1	Barley	cytosol	94.29	94.94
Zm00001d016898_P001	Maize	cytosol	81.11	79.71
Os02t0568200-00	Rice	cytosol	80.71	77.95
GSMUA_Achr3P20380_001	Banana	cytosol	60.05	76.87
EES07014	Sorghum	nucleus	80.57	76.71
VIT_03s0038g00270.t01	Wine grape	cytosol	63.99	69.88
KRH23618	Soybean	cytosol	47.69	69.37
KRH42114	Soybean	cytosol	62.77	68.75
KRH10586	Soybean	cytosol	62.64	68.6
PGSC0003DMT400006173	Potato	cytosol	62.77	68.34
Solyc10g047530.1.1	Tomato	cytosol	62.23	67.95
KRH21782	Soybean	cytosol	62.5	67.95
PGSC0003DMT400083737	Potato	cytosol	59.78	66.77
Solyc01g105680.2.1	Tomato	nucleus	60.05	66.07
CDX84515	Canola	cytosol	62.64	63.5
Bra024285.1-P	Field mustard	cytosol	62.36	63.31
AT5G64330.1	Thale cress	cytosol	63.32	62.47
CDY18715	Canola	cytosol	61.28	62.29
CDX81221	Canola	cytosol	61.68	62.19
KRH49804	Soybean	endoplasmic reticulum, nucleus, plasma membrane, plastid	62.77	61.85
Bra037773.1-P	Field mustard	cytosol	61.55	61.47

Protein Annotations

MapMan:19.2.2.8.2.2.1	Gene3D:3.30.710.10	ncoils:Coil	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628
GO:GO:0009638	GO:GO:0009987	GO:GO:0016020	GO:GO:0016567	GO:GO:0019538	InterPro:IPR027356
InterPro:NPH3-like	InterPro:NPH3_dom	PFAM:PF03000	PFscan:PS51649	PANTHER:PTHR32370	PANTHER:PTHR32370:SF6
InterPro:SKP1/BTB/POZ_sf	SUPFAM:SSF54695	EnsemblPlantsGene:TraesCSU01G114000	EnsemblPlants:TraesCSU01G114000.1	SEG:seg	:

Description

No Description!

Coordinates

chrUn:-:98211075..98213784

Molecular Weight (calculated)

78839.4 Da

IEP (calculated)

7.435

GRAVY (calculated)

-0.284

Length

736 amino acids

Sequence
(BLAST)

001: MWESESDAGE RGLVPVHGVG GSDRHDGLKS DGFVRRDHSW YVNSDIPSDL LVKVGDVSFH LHKYPMISRS GKMGRVIYES TTGAASAAAL DPDTAVAELD
101: DLPGGADSFE LAARFCYGMA VDLTASNISG LRCAAEYLEM TEDLEEGNLI FKTEAFLSYV VLSSWRDSIV VLKSCEGLSP WAENLQIVRR CSESIAWKAC
201: ANPRGVRWAY TGAGSGRPPR SGAASPRWNN AGGGGGGSKE SSPGRGQPVP PADWWFEDVS VLRIDHFVRV VTAIKVKGMR FDLIGAAITH YASKWLPGLT
301: KDAVPHAGGG VDEQWAQVSA AGGLHMIIAG PGGKDDVATS APAREQRMVV ESLISIIPPQ RDSVSCGFLL RLLRLAIMLK AAPALVTELE KRVGMQLEQA
401: ALPDLLIPSV GRADTAYDVD LVQRLVEHFL VQEQTEQVSS YSPGRGEAHA QPEREYYGSA AGARMPPANA AAAAAASSSS GLGLNAKARV ARLLDSYLSE
501: VSRDRNLSLT KFQVLAESLP ESARACDDGL YRAVDSYLKA HPALTEHERK RLCRVMDCQK LSFDACMHAA QNERLPLRVV VQVLFSEQVK ISNALAGSSA
601: LKAAPDGGAP TRRQLLDATP QSFQEGWAAA KKDINTLKFE LESMKAKYLE LQHDMDALQK QVTQSPAGEH GGKAGGKAQQ QQGPSAWSNG WKKLGRLAKM
701: TGAEAAGPGG GHGHAGAGAQ GEAARKAQRR WRNSIS

Best Arabidopsis Sequence Match ( AT5G64330.1 )
(BLAST)

001: MMWESESDGG VGVGGGGGRE YGDGVLSSNK HGGVKTDGFE LRGQSWFVAT DIPSDLLVKI GDMNFHLHKY PLLSRSGKMN RLIYESRDPD PTILILDDLP
101: GGPEAFELAS KFCYGVPVDL TATNISGLRC AAEYLEMTED LEEGNLIFKT EAFLSYVVLS SWRDSILVLK SCEKLSPWAE NLQIVRRCSE SIAWKACSNP
201: KGIRWAYTGK APSPSTTNFA GSSPRWNESK DSSFYCSPSR NTNSQPVPPD WWFEDVSILR IDHFVRVITA IKVKGMRFEL LGAVIMHYAG KWLPGLIKEG
301: GVAIAPAMSS AIGGGLGLGG DEMSISCGSN SSGGSSGPDW KGGLHMVLSA GKTNGHQDSV ACLAGLGISP KDQRMIVESL ISIIPPQKDS VTCSFLLRLL
401: RAANMLKVAP ALITELEKRV GMQFEQATLQ DLLIPGYNNK GETMYDVDLV QRLLEHFLVQ EQTEGSSPSR MSPSPSQSMY ADIPRGNNNN GGGGGGNNQN
501: AKMRVARLVD SYLTEVARDR NLPLTKFQVL AEALPESART CDDGLYRAID SYLKAHPTLS EHERKRLCRV MDCQKLSMDA CMHAAQNERL PLRVVVQVLF
601: SEQVKISNAL ANTSLKESTT LGEAMGTYQP MIPNRKTLIE ATPQSFQEGW AAAKKDINTL KFELETVKTK YVELQNEMEV MQRQFEKTGK VKNTPSSSAW
701: TSGWKKLSKL TKMSGQESHD ISSGGEQAGV DHPPPRKPRR WRNSIS

Arabidopsis Description

RPT3Root phototropism protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.